RNA id: AMCG00017209


Basic Information

Item Value
RNA id AMCG00017209
length 3048
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00017209
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50664326 ~ 50672185 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGGAAGTTGTCTGACGCGCCAAGATTCAAAAATAAGGCAGGAAGGCCAGCGCACTGGTTAAAGcacCACGATGGACGAGAACACGTTTCCTCACTATAAAGCCGATGTCATTGTGCATTTCTACCGAAACGAAATGTTGACTGGCGCAGAGGCAAAAAACTTCACCAAAAGTGATATCACTCCAACCCCGAAGCCAGAGTCTATTCAGAGACTGTATATGCGAGTCCTGCAGCTCTTATTCGGATTCAGACCCGAATTACATTACATGATGCCCTTAgttgaaaatgtacagtatcCTTCAATGCAGGAAGGGGTGACGCCTATAATGAGCCTCTACCTTTCCATGTGTCAGTTTCTCCCAATGTGTCGTGTGTATGATTTCCAGATGAATGACCTTCTCAACCCAAAAGCCAAAAGGACCATATCCATCCTGAGCGGGATTATGAACTTCCTTCACTTCAGAAACCTGCGCCACGAAATGAGTTCGGAGTACCAGCAGGCCTACaaagCTGATGTGGATAAATTGCGCAGTTGTGAGAAAGGAATTAAGGAGGCAGAACAGAAGATTGAAAAGCTTACCACCATCCCAGCAGAGCAGCAGGCCGAGTCCCGAGAGTTATGTGCAGCCCTGACTGAGCTTCAGAGCAAGATGAACCACGAGTACCAGGAAGTGAATGCCATCAATGAACAGCTAGCAGAACTGAAAACTGAACTTGCAGAAAGATCCCAAAAATTGaatcagaagaagGTGGAAGTGGCTACAGTGAAAGAAAATCTAGCGAAACTGAAATCCCAGATCGTGGAGTCTCCAGAAGAgctcaaaaatgaaaaagaaaagatgaaggAGCAAGTGAAGAACACAAAGCAATCTAAGGAATTGACGGAAGAGCGATGGGTCGAGCTGCAAATGAAAGTACAGATGATTAATCAGCACAAGGGGGATCTGAAGAACGTTTACAAACTGCTGCAGGACCTACAGTGTGGAATGGATAAAATGAACGGCCAGCAAGAAGAGATTCATAAGTTGGAAAATTTCAGTGAGAACAGGAAGAAGGAGCTGAAGAACCTGGTCACTGAGGAGGCCCAGCTGAAGAGAGCGCTGACCTTGAAAATGGACAAGGTTTCCAAGCAGCAGATCCGGAGGCAGAAAAATCAAGAGATGAAGCAGCAGCACGTCCAGACCTTGCTCGGGGAATATGACAAAGTTCACCAGAAGAGGGATTATATGCTGAACCAGATCCAGGAAATAAAGAGCGACAAACAGCAGATCAAGACTAAAATACAGTCTCTCAGAGACGATTGCAAGCTAGAGACGGAAAAGGCCCAGACCATCTATGACCAGTTGTCTGTAATGCTGGATAATTTCCACACCCGCATTGAGGACCACATCCACAGCAGCCGGGACGCCATGGAGAAAATGAAAGCACacttttaattttgtctgtttcaatgtttgtttgtttttatatatatatataattttgtaaagctgtttaattgatttttagTAGCTTCATGGATGTCCATCAAAGAATAGGCAGTGACTTGTTAGTGTGAATACACCGCTTCAagagttatttatgtattaaaaaaagagtaATCTGTAACCCCCAACTCCTTCCCATTTGTGTTTTTGCGAGCTCTAGAATGAGGTGAAAGggaaaatatttacatgtaatgaaacattctgtttatttgaaaaaatatataatggcaCACAATTGAACTGCCACATTGTAGTCAAGCTTATGTGATTACAGGCTTTTAACTGCTACACCAATTTAATCCATTGTGGTCAAACTCATACTTTCAGTCTCAGCATTATATAATAGAGTATTAAATCCAAGCTCCTGTCTGGTTAGTGAGCGGCCTTATACTGTACTATTTCTACAGAACTATAATATTGTCCAGCCATTAGTTTAGTTTGTTCTCTACTCAGCTGTGCCATTTCGTGCAGTCAGttctgtgtatataaataaaaaaacatgttttatagtccatgtatatattaattcacaAGGATAATTTGATGTCTGCTGCATTTGTATTAAACGTGTTCCCATCCTAATTTaaggtgttttaatttttatattgtgCGTCTTCTGCAGTATGTCTAAGATCTGAGGCAGAAGTtccatgttgtgtttttgttcagtcGTCTCGTTCTCCTCAGTCCACTCTAACGCGTCGCTCTCCGCGCTCTGGTACCCCAGCCCTCCGACCGGCGGCCTCTTGCTGGACGCCTGTCCGCTTCTCTTGTCCTTGGGTTTCAGGGATTGTAGAGACTCCATTTCCATACCTTTGTGCCTCTGATCGAAGTCAACAATAAAAGGAGACGTCTTTACAACGGTGAGACTCCACAAGAGCAGCAGGAGTAGGAGACACAGTAAAGCCATTATGAATTTATCCCTGTAGACCAAGACGCACTGACTGTGTTCGCATGCGGAAAAGGCCTTTTCTCCGAGCTGCAGTAACGGCTTGTGTTTGTAGGTAGCCGGTGAAAAGCACCTCACATCACTGTGAGCTGAGACATCTTGGTCCTCCAGCCAGGCTTTGAGGTAGACGATGTCACAGCCGCAGTGCCAGGGGTTGGCAGAGAGGTTGATTTTCCCGAGGCCCTGGAGCCCGTCGAACCTCCCGGGTGGCACCGTTGTGAGCAGGTTGTTTTGCAGGTGCAGCTCGGTGGTGCTCGGGGGCAGCGGGGGCACCTCCGTCAGGCCCCTGGAGCTGCAGTTGACGGtaaatccagcaggttttaagGAGAGGCAGCTGCAGGAGTCGGGACATGTCTGGGCACTGGATGGGCTGAGCAAGAGTAGCATGGCTAAGCCCGGACCGGCAATCATCCTTTCTGTTTCAATCCAACCAGCCATGAAAAGTCTTCGATTTTGTAATTGCTTGAAGTTGCAGATCCATGTTGTATCCTGAATTCCTCGCTTGTGGCTTCTCAGAAGTGTGCAATGAAACCAGCACAGTCACAAACAccccttcattttaaaagaaaaaggcgGCGTAGGGAAGTCCCCCCCCCCCTACCATTTCATAG

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11548 NUF2, CDCA1; kinetochore protein Nuf2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23759 lncRNA upstream 23524 50640587 ~ 50640802 (+) True G19152
TU23752 lncRNA upstream 32692 50631378 ~ 50631634 (+) True G19146
TU23711 lncRNA upstream 101048 50559450 ~ 50563278 (+) True G19114
TU23651 lncRNA upstream 312379 50351252 ~ 50351947 (+) True G19062
TU23650 lncRNA upstream 322176 50341417 ~ 50342150 (+) True G19061
TU23810 lncRNA downstream 55555 50727740 ~ 50728151 (+) True G19195
TU23870 lncRNA downstream 465108 51137293 ~ 51138835 (+) True G19245
TU23904 lncRNA downstream 623647 51295832 ~ 51296718 (+) True G19275
TU23921 lncRNA downstream 667728 51339913 ~ 51340117 (+) True G19292
TU24023 lncRNA downstream 893104 51565289 ~ 51571994 (+) True G19366
AMCG00017211 mRNA upstream 11741 50645112 ~ 50652585 (+) True AMCG00017211
AMCG00017210 mRNA upstream 25358 50632108 ~ 50638968 (+) True AMCG00017210
AMCG00017212 mRNA upstream 42379 50615239 ~ 50621947 (+) True AMCG00017212
AMCG00017207 mRNA upstream 126656 50526813 ~ 50537670 (+) True AMCG00017207
AMCG00017206 mRNA upstream 141784 50517042 ~ 50522542 (+) True AMCG00017206
AMCG00017217 mRNA downstream 24661 50696846 ~ 50711492 (+) True AMCG00017217
AMCG00017225 mRNA downstream 288648 50960833 ~ 50972601 (+) True AMCG00017225
AMCG00017224 mRNA downstream 313074 50985259 ~ 50989853 (+) True AMCG00017224
AMCG00017227 mRNA downstream 376436 51048621 ~ 51068325 (+) True AMCG00017227
AMCG00017226 mRNA downstream 487734 51159919 ~ 51165248 (+) True AMCG00017226
TU23712 other upstream 102538 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 111341 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 942855 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1260692 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 6008228 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 2142068 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2148876 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2663724 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2831247 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 3118362 53790547 ~ 53792694 (+) True G19829

Expression Profile