RNA id: AMCG00017210


Basic Information

Item Value
RNA id AMCG00017210
length 1504
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00017210
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50632108 ~ 50638968 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cGGCGTGCGATAGTGGGGGGAAACGCTGCAGTGTTGACAGCAGTCGAACCTGAACAACAAATATGGCTCGAAACGCTGAGAAAGCAATGACGGCCCTGGCCCGGTTTCGCCAGGCCCAGCTAGAAGAAGGAAAAGTTAAGGAAAGGAGACCGTTTCTTGCATCTGAGTGTAATGAATTGCCAAAAGCAGAAAAGTGGAGGCGACAGatcATCAGTGAAATATCTAAGAAGGTGGCTCAGATTCAAAATGCTGGTTTGGGAGAATTTAAGATCCGCGACCTTAATGATGAAATCAACAAGCTTCTTCGGGAGAAAGGACATTGGGAGGTTCGGATTAAGGAACTGGGAGGTCCTGATTATGGCAGAGTTGGACCTAAGATGCTGGACCACGAAGGCAAGGAAGTGCCTGGAAACCGAGGATATAAGTATTTTGGTGCTGCCAAAGACCTTCCTGGAGTCAGGGAGCTATTCGAGAGAGAGCCAATCCCTCCTCCCAGAAAGACTCGGGCTGAGCTGATGAAGGATATCGATGCAGAGTACTACGGCTACCGAGACGAAGATGACGGGGTTTTGGTGCCTTTGGAGCAGGAATATGAGAAACAAGTCATCGCAGAGGCGGTGGAGAAATGGAAGGCAGAAAGGGAGGCTCGGCTGGCTGGAGGAGGACTGGGAGacaaggaagaggaggaggaggaatatATTTACGCAGTGCACGATGATGAGCACTCTGATGAAGACATGGGAGAATTAATGGAAGGAGAGGAAGGATCACAGTCCTTTATAGCCCATGTCCCTGTACCCTCACAGAAAGAGATTGAGGAAGCCTTGGTCAGAAGGAAGAAGATGGAGCTCTTGCAGAAGTACGCCAGTGAGACGCTGATGGCACAAAGCGAAGAAGCTAAAACACTCCTGGGATTATAGCAGGAATGACGGACTAGGATGGGTCTCAAGTCTTGATCTCTGCAATGTGCCGCACATCTGCAATTCAGATGTAAAGTAGGCGTTTAAGTAGCTACATCACAGACCGTTTGCAAGATAACATATTTACTACGaggatattttcttttcagactCACAGCAGTGTTAAAGGTCATGTGCAGTGAGTTACACTTACATACATGTCAGTAAAAGTGTTCCAATGCATAAGATACATGTATCCTGCTATATTGTGTAGGTCTCAAACGTTGAACaagaaatactgtaaataacttttttattaatctgtacTACCGTACTGCATACTgcattgtctttaaaatgtattttctaaaaatgaattgagtgtattttaataaaatgttgtattgacTTGTGTATTATGCTGTTTCATACATGTCATTATTTGTGCTGTTTTCTCTTATCAGTATGGCTATTGAAAAGTGGATAGCAAACATCAAGTATTAAATCTGCTGCTTACACAATTGAACATCCACATGCTGTGATTGTTACGTCTGATAAGCCAGTGGATGAAATAATGGTTAGATATTTCAGGTGAGACAGGAAAG

Function

GO: NA

KEGG:

id description
K12870 ISY1; pre-mRNA-splicing factor ISY1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23752 lncRNA upstream 474 50631378 ~ 50631634 (+) True G19146
TU23711 lncRNA upstream 68830 50559450 ~ 50563278 (+) True G19114
TU23651 lncRNA upstream 280161 50351252 ~ 50351947 (+) True G19062
TU23650 lncRNA upstream 289958 50341417 ~ 50342150 (+) True G19061
TU23648 lncRNA upstream 297602 50333760 ~ 50334506 (+) True G19059
TU23759 lncRNA downstream 1619 50640587 ~ 50640802 (+) True G19152
TU23810 lncRNA downstream 88772 50727740 ~ 50728151 (+) True G19195
TU23870 lncRNA downstream 498325 51137293 ~ 51138835 (+) True G19245
TU23904 lncRNA downstream 656864 51295832 ~ 51296718 (+) True G19275
TU23921 lncRNA downstream 700945 51339913 ~ 51340117 (+) True G19292
AMCG00017212 mRNA upstream 10161 50615239 ~ 50621947 (+) True AMCG00017212
AMCG00017207 mRNA upstream 94438 50526813 ~ 50537670 (+) True AMCG00017207
AMCG00017206 mRNA upstream 109566 50517042 ~ 50522542 (+) True AMCG00017206
AMCG00017205 mRNA upstream 118753 50501043 ~ 50513355 (+) True AMCG00017205
AMCG00017202 mRNA upstream 155353 50458963 ~ 50476755 (+) True AMCG00017202
AMCG00017211 mRNA downstream 6144 50645112 ~ 50652585 (+) True AMCG00017211
AMCG00017209 mRNA downstream 25358 50664326 ~ 50672185 (+) True AMCG00017209
AMCG00017217 mRNA downstream 57878 50696846 ~ 50711492 (+) True AMCG00017217
AMCG00017225 mRNA downstream 321865 50960833 ~ 50972601 (+) True AMCG00017225
AMCG00017224 mRNA downstream 346291 50985259 ~ 50989853 (+) True AMCG00017224
TU23712 other upstream 70320 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 79123 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 910637 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1228474 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5976010 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 2175285 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2182093 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2696941 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2864464 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 3151579 53790547 ~ 53792694 (+) True G19829

Expression Profile