RNA id: AMCG00017211



Basic Information


Item Value
RNA id AMCG00017211
length 795
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00017211
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50645112 ~ 50652585 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCCAGCAGAGGGAAAGCTTCTCGAAGCATGTCGATCGTGATGGTGTTCGAGAAGCCCAAACTGGGAGAGCAGTTTCTGAAAAGCCTTCTTGGCAGCCGGGATGGGCGTCCTTCCCCGGACAAGAACCCCGTCAATGTCAAACAGGAGGCCAAAGCCTGGCTGGGACTGAAAGAaaaggagggggtggggggagaaaaaacaagATTTGGCCACGGGACTTTCCTGGTCTGCTTAGAAAACATCTTCAAGAAGATTACGGGTAAAGATCTGAAGTATGAGGCCCTGGTGGGGAAACCGAGCGAGGTCACCTACCACTACGCAGAGTATCTGATCAGGGCCCAAGCTGAAGAGAGGAGCTGGAGGAAGCCGATCAGAACCCTGTATGCCGTTGGGGATAATCTCATGACTGACATCTATGGCGCTAACCTGTACAATCGCTACCTTGAAGAGCGCACCTCCCGGAAGAGCTCCCAAGCCCGGGCCAAGGTGGCCTCCGGCACCGGGACGTCCGGCACCACCGTGTCCCAGGAGGTGGAAGTGGACAATGCCTGGGAGAGCGAGCTGGCGGCCCCCTCCGCCACGGCCTGCAAGTCTGTATTGGTCTGCACAGGGGTCTATAACCCGCGCACGGAGGTGCCCGCCGACCACAGCGAGTCCATCATGGAGACCGTGTTTCACGGCCACAGGGACTTCCGCTTCGACCCGGCCCTGGTGGAGCCGGACCACATAGTTCAGGATGTCGATGATGCCGTGGAACTTATTTTCGAGCAGGAGAAATTTGTGACTCCGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23759 lncRNA upstream 4310 50640587 ~ 50640802 (+) True G19152
TU23752 lncRNA upstream 13478 50631378 ~ 50631634 (+) True G19146
TU23711 lncRNA upstream 81834 50559450 ~ 50563278 (+) True G19114
TU23651 lncRNA upstream 293165 50351252 ~ 50351947 (+) True G19062
TU23650 lncRNA upstream 302962 50341417 ~ 50342150 (+) True G19061
TU23810 lncRNA downstream 75155 50727740 ~ 50728151 (+) True G19195
TU23870 lncRNA downstream 484708 51137293 ~ 51138835 (+) True G19245
TU23904 lncRNA downstream 643247 51295832 ~ 51296718 (+) True G19275
TU23921 lncRNA downstream 687328 51339913 ~ 51340117 (+) True G19292
TU24023 lncRNA downstream 912704 51565289 ~ 51571994 (+) True G19366
AMCG00017210 mRNA upstream 6144 50632108 ~ 50638968 (+) True AMCG00017210
AMCG00017212 mRNA upstream 23165 50615239 ~ 50621947 (+) True AMCG00017212
AMCG00017207 mRNA upstream 107442 50526813 ~ 50537670 (+) True AMCG00017207
AMCG00017206 mRNA upstream 122570 50517042 ~ 50522542 (+) True AMCG00017206
AMCG00017205 mRNA upstream 131757 50501043 ~ 50513355 (+) True AMCG00017205
AMCG00017209 mRNA downstream 11741 50664326 ~ 50672185 (+) True AMCG00017209
AMCG00017217 mRNA downstream 44261 50696846 ~ 50711492 (+) True AMCG00017217
AMCG00017225 mRNA downstream 308248 50960833 ~ 50972601 (+) True AMCG00017225
AMCG00017224 mRNA downstream 332674 50985259 ~ 50989853 (+) True AMCG00017224
AMCG00017227 mRNA downstream 396036 51048621 ~ 51068325 (+) True AMCG00017227
TU23712 other upstream 83324 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 92127 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 923641 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1241478 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5989014 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 2161668 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2168476 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2683324 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2850847 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 3137962 53790547 ~ 53792694 (+) True G19829

Expression Profile