RNA id: AMCG00017212


Basic Information

Item Value
RNA id AMCG00017212
length 2387
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00017212
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50615239 ~ 50621947 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaagcGAAATATTGTTTCAAAACCGAGCTGTGTTCACATCCCGTCGTGTGCGGGCGGTTCATGATCCGGGAATAGAGCGGAGAAACCGAGAATATCCCCCGAAAAAAGCGAGCCAGTCGAGGGGGATTTCTGGGAAAGTGTGAACTCTTAAAGTGGAAATGAACAGCAGTGAGTGCTTCAAATGCGGCCGCAATGGCCATTGGGCCCGCGAGTGCCCCACTGGAGGAGGACGTGGACGTGGGGGCAGGAGCCGTGGCCGAGGGGGCTTCACATCAGCCAGAGACATCTGCTATCGTTGTGGAGAACCAGGCCATGTTGCTAAGGACTGTGAACGTCAGGAGGATGCATGCTACAACTGTGGCAAAGGTGGTCACATCGCGAAGGACTGCAAGGAGCCCAAGAAGGAGAGGGAGCAGCACTGCTACAACTGTGGGAAGCCCGGGCACCTGGCACGCGACTGCGACCACGCCGATGAGCAAAAGTGCTACTCTTGTGGAGAGTTTGGTCACATCCAGAAAGACTGCACTAAAGTGAAGTGCTACAGGTGTGGTGAAACTGGTCACGTTGCCATTAACTGCAGCAAGACGAGTGAAGTCAACTGCTACCGCTGCGGCGAGTCCGGGCACCTGGCGAGAGAATGCACCATCGAGGCCACAGCTTAATCCTTTTCCTTTGTCGCCCCTCCTTTTTCTGATTGAtggttgtattattttctctgaaTCCTCTTCACTGGCCAAAGGTTGGCAGATAGAGGCTAGTCCCAGGCCAGTGAGCTTTACTTGACATGTAAAAGGAGGAAAGGGGTGGAAAAAAATCGACTTTctgcatttaatacaaaaaaaaaaaatgtttatgtttagtttGGTAGAGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCTTTCCATGCCACTGGTAAATAGGGATTGAAGAATGGGAAGAGACGAGTCAGATAAGCCCCCCTCCGGCGTCTTGGCAGCGATTCTgagtgaggggggggggaaaaataaaatcgtGGGAGTGTGAAAACTCCcatgtatgatttaatttttgtttggtgggaaaaaaaaaataatgtgttggcCTAAGAGTGTTTGACCTCGGAAGCAGTTCACAACATAAGATACATCAGTCTCGGGGCCCTACCAGCAGTACACAGCTAAGTGGGAGTTAACAGAaaagaaatattatatattaataaacctgtttaatttctgaaagattaaaaaaaaaatcaggataAATTGTTTTATATCTGCCAGCCGTTCGCAAGCTACGGCTGCGGCATTCGGAGATACTCATTAGGTCAAAGTTTCGGCCAAGGTTTTTCAAAGTAGTTTAGATAATTTAACCCAAGGAGGAATTAAAACTTCAAGGAGAACAGTAGAAAGCAGAGTCTGAAGTTACTCGAGTAAGGAGAATGTTTTcacagaaatcaaaatgttatttttgtacaatatatCACTTAGACTACTGTAAAAATATCATTTGCTTGTACTCAGTTTTTAAGTCGGAAGGTAAATGCAACTGAAGTCCtagaaaatagaaatgtaattttaaactaTCAATAAAgctggaggaggaaggggagcaagACTGAAGTTTCTTTTCTTGGCTACTTTCTTTGGATCTGTTGgatattaactttttttctttattgacaAAGGGGTTATTGCTGAAATTTAAGACATCGCTATAGTTAATGTAAAGAAATGTGTTGCTGTTGGGTGATTCTTGAATTGGGTTGCCACGACATACATTTTTCTCCCTCAAAACCCATACACCTTTTTAATAAAACCTATACGAACTCGTTCTGCTCAGAAAAGGAGAATGTGGGTTTCTCTGGAATGCCTTGGCCCACATTTGGGTGAAAACCAAACCGCTTGCATGAATATCCTACGAGTCTTTAATGACTGAGTTTCTAATCTGTTGATCAGACAAACAAGCTTCATGTGCTGTTAGAACATGTGTTATGTGCATAAGCTAATAAAAATCCAACACGGCTTTCTCTAAATCTACAGTTGGTATAGCCTGGGGATCGTAACGAGCCAGGTGGAAACTGTTTCTGTATCAGGACTGCAAACGGGAGAATTCAATTGTGCTTTCATCTCAAAAAGTACGGATAAGTCTAACCCTCATCCATATCCTAGAATCGGCCTTTAAGTAGTCCCTGATTTATGGTGTGAGATACACTTTGAATTCTCGTTAAACCTGTTTGTAAATAGCAAGGATATAAATCAACTATTATTTGACTGACAAGATAAAATTATGTATCTTTTACCATTCTTGAATGTGTTACAACTTTTGGGGGGGATCTTAGGCAATGCATTGATTTAGGACTTGACATAAGTGAATAAACTTGCCATTTATGGTTACAAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09250 CNBP; cellular nucleic acid-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23711 lncRNA upstream 51961 50559450 ~ 50563278 (+) True G19114
TU23651 lncRNA upstream 263292 50351252 ~ 50351947 (+) True G19062
TU23650 lncRNA upstream 273089 50341417 ~ 50342150 (+) True G19061
TU23648 lncRNA upstream 280733 50333760 ~ 50334506 (+) True G19059
TU23647 lncRNA upstream 281873 50332466 ~ 50333366 (+) True G19058
TU23752 lncRNA downstream 9431 50631378 ~ 50631634 (+) True G19146
TU23759 lncRNA downstream 18640 50640587 ~ 50640802 (+) True G19152
TU23810 lncRNA downstream 105793 50727740 ~ 50728151 (+) True G19195
TU23870 lncRNA downstream 515346 51137293 ~ 51138835 (+) True G19245
TU23904 lncRNA downstream 673885 51295832 ~ 51296718 (+) True G19275
AMCG00017207 mRNA upstream 77569 50526813 ~ 50537670 (+) True AMCG00017207
AMCG00017206 mRNA upstream 92697 50517042 ~ 50522542 (+) True AMCG00017206
AMCG00017205 mRNA upstream 101884 50501043 ~ 50513355 (+) True AMCG00017205
AMCG00017202 mRNA upstream 138484 50458963 ~ 50476755 (+) True AMCG00017202
AMCG00017201 mRNA upstream 169442 50441547 ~ 50445797 (+) True AMCG00017201
AMCG00017210 mRNA downstream 10161 50632108 ~ 50638968 (+) True AMCG00017210
AMCG00017211 mRNA downstream 23165 50645112 ~ 50652585 (+) True AMCG00017211
AMCG00017209 mRNA downstream 42379 50664326 ~ 50672185 (+) True AMCG00017209
AMCG00017217 mRNA downstream 74899 50696846 ~ 50711492 (+) True AMCG00017217
AMCG00017225 mRNA downstream 338886 50960833 ~ 50972601 (+) True AMCG00017225
TU23712 other upstream 53451 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 62254 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 893768 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1211605 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5959141 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 2192306 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2199114 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2713962 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2881485 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 3168600 53790547 ~ 53792694 (+) True G19829

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007307 False 1746 mRNA 0.48 5 NC_007122.7 491587 ~ 497854 (-)
grasscarp (Ctenopharyngodon idella) CI01067678_00003958_00004350.mRNA True 1273 mRNA 0.45 2 CI01067678 3002 ~ 4350 (-)
tiger barb (Puntius tetrazona) TU115925 False 1476 TUCP 0.49 4 NC_056709.1 1074744 ~ 1077399 (+)