RNA id: AMCG00017217


Basic Information

Item Value
RNA id AMCG00017217
length 3648
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00017217
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50696846 ~ 50711492 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAATCGGTGATTCGGAGATCCCTTTGGAGGCCGAAAGAAGCAACACCAGTTGTTCTTTGAAACGCCAGTTTCCAGTGGGGTATGATAGTGGGATGGCTACAGATGAGGGTGGCAGAGAAACTGACCAGGAAAGACTGTCTCCACGCAGCCATAGAGAAGACAGGAGCCTCGAAACTCCCAAATCAGCTTCCAGTTCAACGTCTCGCACATCATCTCTTTCTGGGAACTCAATTCAGAGGGAAACTGAATCCTCCAGCACTCACACTGTAACCTGTACCATCAGCATCACGCTAGCTATCCCTAGAGGcgaagaagaggagaaaaatgCTGTTGCGGAGAAGGCGAAGAAAAGGCCAAAGAATTCCAGTGGAATAGTTGAAGCTCCCAAAGCGCAGAGTTTTTACCACATTGAATATTTCCTGACCCCCGACGATCCAGAGCCCACAAAAATTGATTTGGTGATGTTTGGACCAGCTGCCAAGGTCTACATGGAAAATGAAACTAAGATTTTAAAACCCTGGCAAGACGGAGACCAGACGTGGCTTGGTTGGAGTCAGTCCTTGGAGCTTAAGGTCAACAGGGAACTCTTAATAAAACTGACCTCTCACAAAATCACCTTCAGAGTGTGGGACACAAAGGACCGAGTGTCGGCCAAAGCCAGGTATGACCGACCCAAAGCCTTCAGACTGCCCCAGGGGAGGAGCGGGGAGGACCCAGACAATGCTGgtGGTATCAAAAGTATGGTACAGAAGCAGAGGAAGCTGTTTGAAACAAGGCAGCCAAAGTCCAGTCATACTGGCCGACAGGAGAAGAGCTGCCTTGGAGCCGAGGCTACTAGGGAATCTGTGCTGAACTGTGTGGCGGCAACACACAACGAATTGGCCGCAGCAGAATTGCTGAGGAAGAACGGCGCTGCCACAGCGGAACTGGATCCGGTGCATTTGCTAGCAGGAGACACATTTGTGACTAATTGCTTGATTAGTTCCTCGCCTGGAGTTCGGGAAGGCTTTTGTACTGTCTCTGTAGATAAATCACTAATTCCAGAAGAACTGAAATGGGATCTGAACCCTCTTGTCATCAAGATAGAGTCGGCCACCTGTCTGCCAACGTCCCCTGTTCCTATTCATGAACTTAAGGCAAACTGTGCTCCAGTGTTTTGTTGCTATAAATTCCCCGGTACCAACGGCCACCGCACGAAGGGCCGAGACCACGGCACACACGTGTACTTCAATGACGTCAGTGTCATCCTGACAGGCCTGCTGAGCACCGGGAGTTTTCGAGAGTTTCTCGGTGGATCACCTCTGGAGATAGAGGTCCACGACAGAGACAAAAGGATGGAGAAACCACCCACGAAGCCTGCGTTGTTTGGCACCGAACCCGATGATCAGAAGTTGAGCAACGTGGGTCTGGTGTCCAGCAAACGAACCACCCACAATCCGTTTCAAGACAAGGCCAAATCATTTGATCCGTACGGCATCGCGAAGGTCGACCTCTCCGGTTTGTTACGTGGGGAAAAGAGTGTGAAGGTCAGAGTGCCGATTCATTCCTCACCACCTCCAGACCCAACCGGTCATGAAACCAGTGGATGTGAGGGTAGGATAGTCGGACTTGCAGGGTCCGTAGATGGTCCACAAGACTCGCCTTTTCCCACCGGTCATTACTTGGATTCAAATTCTCTGCTTAAAGTGAGTGTTGAAATCACTTGCCCTCTGTCCCAGGAATCCAGCGCCATCGAAGGACAGATGACGGACTGTCCTTTTGGACGCATCGTTTACATCTGCAGGTCTCAGAATTGCCCCGTGGCGACTCGGCTGAGGTCGGAGATTTATAGGATAAATGCCGGCGCCTTTCGGTTGGAGTCGTATCCAGAGAGATTGATTGAAAACGCTCTGTCCTGTTATAAACTGAAACCgaaggaaagagagagcagagatCTGGACATTGTCACGGGTTTCCATGTGCAGGATGGGAAAATGCACCTCTTTGTACTCGAGGGGCTGAGGAATCAAGCCATCAGAAGACTGTGGGAAAAGATACCAAGAAAGTCTCGCAGTGCTGATGAAGGACATGTGGAAGTGTTTTATAACTCTGAGCTGGGCTTCGAGCGGCGGCTCTATGCTGTCTTAAATATGAACGTCTGTCAAATCCATCTCCACGAACCCCTGGCAGATATAATGAGGCAGCCCTTGCTTTATGTAAGGGATATGGTTCCTCTGGCCTGCTTCCAAGCCTTGTCAcgACTAGACCTCATCTGCCAAGCGAAGAAGCTCAAAGATGTGACGCACAGCAACCTGTTCCCCTCCGCGGAGATGATTCTCAGTCTGAGCAAAGAGTTTGGGGTTATTCTACAGAGAGAGGAGACCTTAAAGGGTTTCAAGAGAAGTCTGACATGGGACAGTACAGAATTCCCGCCTGCGAACGCTGAAGCCCAGACCCTGCACAGCCCACTGTCCACACACAGTGCAGACTATATGGAGTGGACATCACAAATGTTCACCCAGGATCGTGAAGGGACACAAAAAGACTTCATCAGGGATAATATTGAAGAAGTGCGTCAAGCGAGTAGAAAACTACGAAGACCAAAACCGGATACGATAGTAGCTCTTCCTCCTCCGGGCAAGGAGGCTCATAACTACAGTACCCAAGCGTGGAACTCCAGCCAGCAGGCCAGGGAGCTGCTACGCCGAGAGATGGCGAAGGAGCCATCCCGGAGGTTCACATACAGCCAGCAATACCAGTCGGCTACAGTAGAGCCGGTGGACGTTGAGAGTGAAGTTAAGGCCGCCGAAGCCCGATCAAAGGCAGCCTGGCGTACCTGCGACGGCTTCACGTATCCGGGCATCAGGAGCAGCATAGAGTCAAACGAACATCACAGGAGACCCGACGACGCCCGCACCGAGGAGCTGAGAAAGCCTTGGAGAGAGAATATTCTCCATGCCAAGACGCTGCAGCCGCCCCTGTCTCGTGAGCGATGGAGCTGGAACAAACGACATGCGGATTTCGAGCTGTACAAGCGCCCCCCCCGCTTCTCCAGTCCCGAGCCCCCAGTTACAATATACCTGGCAGgAGACCGGCTGCATGAGGAGCAGCTTCAAGCCGCCCGGGCACAGTACCTGAGGTGGCTGAACAAAGTGCTGGCGACCGACGACCAGAAACTTAGTCGGCGCTCTTTGGAGTTCAAGTGTCACACAGGTGGAGGCAAAGAGCTACTGAAGGATAAACCCATGAAATACTCTTTAAGGAGGTCAGGAATGATCCTTAAACCCATCCCGGCACTGTCCGTACTCCAGCACGTGGATTCGAGTGGCCCAGAGGAGGCGGGTCGGGACGTCTCTGCCGGGTTTGCACCAGGCTTACTGGAGAACCACAGCCTGTGCTGGGATGGCAATATCATACCTCGGCACAACTTTGAGCACAAGAAATTCCAACAGCTCAAAGGACAGCCATTTGTGggagtctggagagagagactgtttcAGTGCAAGCGTGTGTCCAGGCCGCTGacggaggaagagagaggggtgtACCTGTTCCAGCGGCCTGGCCCGGTCACTGAGGACAGAGCCGTGGCAGTCAGGGCCCGGCCGGGGAGAAACATTGTGGAGACCAAGACCTGCCACgatgtcttcacacacatcGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23759 lncRNA upstream 56044 50640587 ~ 50640802 (+) True G19152
TU23752 lncRNA upstream 65212 50631378 ~ 50631634 (+) True G19146
TU23711 lncRNA upstream 133568 50559450 ~ 50563278 (+) True G19114
TU23651 lncRNA upstream 344899 50351252 ~ 50351947 (+) True G19062
TU23650 lncRNA upstream 354696 50341417 ~ 50342150 (+) True G19061
TU23810 lncRNA downstream 16248 50727740 ~ 50728151 (+) True G19195
TU23870 lncRNA downstream 425801 51137293 ~ 51138835 (+) True G19245
TU23904 lncRNA downstream 584340 51295832 ~ 51296718 (+) True G19275
TU23921 lncRNA downstream 628421 51339913 ~ 51340117 (+) True G19292
TU24023 lncRNA downstream 853797 51565289 ~ 51571994 (+) True G19366
AMCG00017209 mRNA upstream 24661 50664326 ~ 50672185 (+) True AMCG00017209
AMCG00017211 mRNA upstream 44261 50645112 ~ 50652585 (+) True AMCG00017211
AMCG00017210 mRNA upstream 57878 50632108 ~ 50638968 (+) True AMCG00017210
AMCG00017212 mRNA upstream 74899 50615239 ~ 50621947 (+) True AMCG00017212
AMCG00017207 mRNA upstream 159176 50526813 ~ 50537670 (+) True AMCG00017207
AMCG00017225 mRNA downstream 249341 50960833 ~ 50972601 (+) True AMCG00017225
AMCG00017224 mRNA downstream 273767 50985259 ~ 50989853 (+) True AMCG00017224
AMCG00017227 mRNA downstream 337129 51048621 ~ 51068325 (+) True AMCG00017227
AMCG00017226 mRNA downstream 448427 51159919 ~ 51165248 (+) True AMCG00017226
AMCG00017229 mRNA downstream 458121 51169613 ~ 51176459 (+) True AMCG00017229
TU23712 other upstream 135058 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 143861 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 975375 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1293212 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 6040748 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 2102761 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2109569 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2624417 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2791940 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 3079055 53790547 ~ 53792694 (+) True G19829

Expression Profile