RNA id: AMCG00017219


Basic Information

Item Value
RNA id AMCG00017219
length 3387
RNA type mRNA
GC content 0.58
exon number 14
gene id AMCG00017219
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50731649 ~ 50753341 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATCTCGTGGGCTTATGTAAAGGCGTCGAAGGTGAAGCTCCAGGCGGCGAGACTGGCACCTCACTGGACGGCTCCTCGGGTTATGGTCGAGGCCCCGTGACCCACAGCTCGGCGCTCAGCCCCGACCACTTCGACGCTCCTCTCTACGGACATTCCATTTCGCCCGGGCAGCAGCGCCCCCGGCGGCCGAAGCTGCAGCACTCGCAGTCCATCCTGCGCAAACAAGCGGAGGAGGAAGCGATCAAGCGGTCTAGATCCCTCTCCGAGAGCTATGAACTCTCCACAGACCTTCAGGACAAGCAGGTGGAGATGCTTGAACGTAAATATGGGGGACGTTTCATAACCAGACATGCCGCGCGCACCATCCAAACGGCCTTCCGCCAGTATCAGATGAACAAGAACTTTGAGCGTCTCAGGAGCTCTATGTCTGAAAATCGCATGTCCAGACGTATTGTCCTGTCCAATATGAGAATGCAGTTTTCCTTTGAAGGACCTGAAAAAGTCCACAGCTCCTACTTTGAAGGCAAGCAGGTCTCCCTGACCGACGAAGGCACTAAGATCGGCGCGATCGTCCAGTCCGAGTGTGGGGACCTTGGAGGTTCAGCCAACATGAAATCCCCGGCGGCGCAGAACGACTTCACGGACGCTATAACGGAGCTGGAAGATGCTTTCTCCAGGCAGGTCAAATCCTTGGCGGAGTCCATCGACGACGCTCTGAACTGCCGTAGCCTGCACTCGGACGAGAACCAGTCAGagcaggtcagaggtcacccAGACATGGAGAGGGAGGTAGCCTACCAGGTGAAGCCCTCTCACGGTGCTGACCACCGCAAGCTGGATGAGATGACCGCCTCCTACAGCGATGTGACTTTGTATATCGACGAAGAGGAGCTCTCCCCGCCTCTTCCTCTGTCTCAGTCGGTGGACCGGCCCTCGAGCACCGAATCCGACCTGCGCATCAGATCTGTGAACTCCGCCCAGGAATATTGGTCAATGACCCACAAGGACGACAAGGTGGACACGGACACAAGCTGCCGGAGCACCCCATCCCTGGAGTGCCAGGAGCAGAGACTACGGGTGGACCACCTGCCCCTGCTCACTATCGAGCCTCCCAGCGACAGCTCGGTGGACCTGAGTGACCGCTCGGAGAGGGGGTCGCTGAAGAGGCAAAACGCCTATGAACGAGGGATCGCTAGCCAGCAGGGAAGCCCCAAACACATTTCTCATGGGATACCTTCGAGGGGTCCATCCCGAGATGATGACCAGCCCAGGCACAGGCCTCGGCAGCTGGAGAGCCACTTGGCCATCAACGGGACGGCCAACAGGCAGAGCAAATCGGAATCTGATTTCTCTGACGGGGACAACGACAGCATCAATAGCACTTCTAACTCAAACGACACGATAAACTGCAGCTCGGAGTCCTCGTCCCGGGACAGTTTACGGGAGCAGACACTGAGCAAGCAGACGTACCACAAAGAAACGCGCAACAGCTGGGACTCCCCCGCCTTCAGTAACGACGTCATCAGGAAGAGGCACTACAGGATTGGGCTGAATCTCTTTAACAAGAAGCCGGAGAAGGGAATCCAGTATCTGATCGAGCGTGGCTTCGTCCCCGACACGCCTGTAGGTGTGGCCCACTTTCTTCTCCAGCGAAAGGGCCTCAGCCGCCAGATGATCGGGGAATTCCTGGGGAACCGACAGAAACAGTTCAACAGGGATGTCCTTGACTGTGTTGTGGATGAGATGGATTTCTCAGGAATGGAGTTGGATGAAGCTCTCAGGAAGTTTCAAGCTCATATCCGGGTTCAAGGCGAAGCACAGAAAGTGGAACGGCTGATTGAAGCTTTCAGCCAGCGCTATTGTATCTGTAATCCGGGGGTGGTCCGCCAGTTCCGAAACCCAGATACCATCTTCATCCTGGCTTTTGCAATTATCCTCCTGAACACGGATATGTACAGCCCCAATGTGAAGCCAGAACGCAAAATGAAACTTGAAGATTTTGTAAAGAATTTGCGTGGCGTTGACGACGGGGAAGATATCCCACGGGAAACGCTGACGGGGATTTACGAGAGGATCCGCAAACGGGAGCTGAAGACCAACGAAGACCACGTGTCGCAGGTTCAGAAAGTGGAGAAGCTGATTGTGGGAAAGAAGCCCATTGGATCTCTGCACCATGGGCTCGGCTGtGTGCTGTCGCTTCCCCACCGCCGACTCGTCTGTTACTGCAGGCTGTTTGAGGTCCCTGACCCCAACAAACCCCAAAAACTGGGGCTGCACCAGCGGGAGATCTTCCTGTTCAACGACCTCCTCGTGGTCACAAAGATCttccagaagaagaaaaactctGTGACCTACAGCTTCAGGCAGTCCTTCTCATTGTATGGGATGCAAGTTCTCCTCTTTGAAAACCAGTATTACCCCAACGGCATAAGGCTTACATCGGCCATCCCAGGTGCTGACATCAAAGTCCTCATCAACTTCAACGCCCCAAACCCCCAGGATCGCAAGAAATTCACCGACGACCTGCGGGAGTCGATAGCGGAGGTCCAGGAAATGGAGAAGTACAGGATAGAGTCCGAGCTGGAGAAGCAGAAGGGAGTGGTGCGTCCCAGCATGTCTCAGAGCTCCGGCCTGAAGAAGGAGGCGGGAAACGGCACCCTGAACCGGACCAGCCTGGACGACAGCTACGCCACGGGGGAGGGACTCAAGCGGAGTGCCCTGAGCAGCTCCCTCCGCGACCTCTCGGATGCAGGCAAGCGTGGGCGCCGAAGCAGTGCAGGATCACTAGACAGCAATATGGAAGGGTCCATCATTAGCAGCCCCCACATGCGCCGGAGAGCCACCTCGACCCGCGAGTGCCCGTCTCGCCCTCACCAGACTATCCCCAATTCCTCCTCACTCCTGGGAACTCTGTTTGGCAGTAAGCGGGGGAAGCCCTCGGCGCAGGGCCACCCTCCTCCGCCCTCGCAGTCTCCGCACCCCACCCTGATCTCGCACACCCCGCACCCCTCCACCCACACGCCCTCGCTGCACCACAGCAGCTCCCTGGAGACGCAGACGCAGGCCCAGATGCATCACGCCCAGTATTGCCACGTGCAGCAGAACCCCCCGccctaccaccaccaccaccactaccaccCGCCCGCCCACGCCCAGCACCCGCCCGCCCACCAGTACCACCAGCACTCCGCACATTCCCAGCACCCTCCCTATGCCGCCGCCTCCCACTCGCACACCCCACACGCCCACGGCACCCACGGCCAGCACTCCCAGCATTCCTCCcactcccagcatgcctctCACCACCACGGGCCCCCGCAGCCTCCCGTGCCGGCCCCCAGCAGCACCAAACCCAAGCATAGCGGCATCAGCACGATCGTCTAA

Function

GO: NA

KEGG:

id description
K12495 IQSEC; IQ motif and SEC7 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23757 lncRNA downstream 92878 50637315 ~ 50638771 (-) True G19150
TU23756 lncRNA downstream 92878 50637869 ~ 50638771 (-) False G19150
TU23747 lncRNA downstream 109210 50622181 ~ 50622439 (-) True G19141
TU23741 lncRNA downstream 160926 50568350 ~ 50570723 (-) True G19137
TU23740 lncRNA downstream 168733 50561023 ~ 50562916 (-) True G19136
TU23886 lncRNA upstream 412017 51165358 ~ 51165675 (-) True G19259
TU23900 lncRNA upstream 447590 51200931 ~ 51212373 (-) False AMCG00017232
TU23960 lncRNA upstream 542490 51295831 ~ 51296743 (-) True G19316
TU23977 lncRNA upstream 684539 51437880 ~ 51438093 (-) True G19330
TU24212 lncRNA upstream 1794396 52547737 ~ 52548050 (-) True G19516
AMCG00017221 mRNA downstream 9428 50712988 ~ 50722221 (-) True AMCG00017221
AMCG00017218 mRNA downstream 37458 50692600 ~ 50694191 (-) True AMCG00017218
AMCG00017220 mRNA downstream 52451 50676251 ~ 50679198 (-) True AMCG00017220
AMCG00017216 mRNA downstream 60285 50670588 ~ 50671364 (-) True AMCG00017216
AMCG00017213 mRNA downstream 67980 50656119 ~ 50663669 (-) True AMCG00017213
AMCG00017223 mRNA upstream 144772 50898113 ~ 50898373 (-) True AMCG00017223
AMCG00017222 mRNA upstream 163067 50916408 ~ 50955842 (-) True AMCG00017222
AMCG00017228 mRNA upstream 386497 51139838 ~ 51155195 (-) True AMCG00017228
AMCG00017232 mRNA upstream 430890 51184231 ~ 51200937 (-) True AMCG00017232
AMCG00017233 mRNA upstream 545019 51298360 ~ 51327317 (-) True AMCG00017233
TU23267 other downstream 2237300 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 7867033 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 9514418 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 12672710 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 677514 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 692246 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 692246 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 1102905 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 2105249 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007959 True 3405 mRNA 0.53 14 NC_007122.7 26707262 ~ 26832685 (-)