RNA id: AMCG00017221


Basic Information

Item Value
RNA id AMCG00017221
length 1873
RNA type mRNA
GC content 0.54
exon number 15
gene id AMCG00017221
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50712988 ~ 50722221 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGACATAGTCTGCGCTGTGTCGTCATCAAAGTGCGACAGAAAGGGGTGAAAGGTTTTAGCAGGAGGAAATATTTGACAGAGACAGTTCAAGGGGAGAAGTTTAGTTTTTCTCCTATTGCAATGAATTTTAACGGACTGTTGAGGGTCTCCAAGTCGCTGAAATTGGGAAGGAGTGTATTAATGCCCCGAGTGGGACACAGAGCCAGTGAAGGCTGCAGACCATGCTGGCACAAGCAGCGCTTCTTCAGGACTGATTCGAGGCACATGACCTACGCCAAAGAGCTGTTCCTGGGCAGAGTAAACAAGAAGGAGGTGTTTCCATACCCAGAAATCAGCCAGGAAGAGCTGGACGAAATCAATCAGCTGGTGGCACCAGTAGAGCGTTTTTTTAATGACGATGTGGATTCCAAAAAGATCGACCACGAAGCCAAAATCCCTCCAGAAACGATGGCTGGGTTGAAGGAACTCGGGCTGTTTGGGATCCAGGTCCCTGAGGAGTACGGGGGGCTCGGGCTGTCTAACACAATGTATGCACGCCTGGGGGAGATCACGGCGTTGGACGCCTCCATCTCGGTCACGTTAGCAGCTCATCAGGCAATAGGACTGAAGGGAATTCTGATTGCTGGGAATGACACCCAGAAAGCCAAGTACCTGCCCAAGCTGGCCTCCGGGGAACACATCGCTGCCTTCTGCCTGACAGAGCCCGGGAGGTGGatttgGATTTCAAACGGTGGCATCGCTgatattttcacagttttcgCCAGGACTGAGGTGGTGGATGAAGAAGGCAACAGAAAAGACAAGATCACAGCGTTCATCGTGGAGCGAGCCCATGGGGGGGTCACCAGCGGGAAGCCCGAGGACAAACTGGGCATCCGGGGGTCCAACACCTGTGAACTCACGTTTGAAGACACCAAGGTGCCCGTAGAAAATGTAATCGGGGAAGTCGGAGGTGGATTTAAGGTCGCTATGAACATCTTAAACAGTGGCCGATTCAGCATGGGCGGTGCCTGTGCCGGAATGATCAAGAAGCTCATCGGGCTCACGGCGGAGTATGCAGGGACCCGCAAACAGTTCGACAAGAGTCTCAGCGAGTTCGGGATGATTCAGGAGAAGTTTGCTCTGATGGCTCAGAAAGCGTTCGTGATGGAGAGCATGGCCTACCTGACCGCAGGCATGATGGACCGCCCGGGTGTGCCCGACTGCTCGGTGGAGGCAGCCATGGTGAAGGTGTTCAGCTCGGAGGGAAGCTGGCTGTGTGTCAGCGAGGCCCTGCAGGTGCTGGGGGGTCTGGGCTACACCAAGGATTACCCCTTCGAGCGCTACCTCCGAGACTGCCGCATCCTGCTCATTTTTGAGGGTACCAACGAGATCCTGAGGATGTACATAGCGCTGACGGGAATGCAGTACGCCGGCAAAGTTTTGACAGGAAAAATAAAGGAGATGAAAAAAGGTAACATTGGAGTCGTGATGGAGATGTTTGGGAAGAAGCTGCGCGACTCTTTCACAAGGAAGGTTGATTTGGGGCTGACGGGTAACGACGGCGTGGTGCACCCCAGCCTGGCGGACAGCACTAAGAAGCTTGAGGAAAACGTGCATTATTTTGGTGTAACAGTTGAAAGTTTACTCTACAGATATGGGAAGACCGTCGTCGATGAGCAGCTGGTTCTGAAGCGAGTGGCCGACATCGTTATCAACCTGTATGCGATGACCGCGGTTCTGTCCAGGGCGAGTCGCTCCATCAGCATCGGCCTCCGCAACCACGACCACGAGGTATTACGATCCGCAACGCGGCTGTGCTCCTGGGCTTTTCCTACCAAAGTCATCACGGCTTTTCCGAGGAGCAGTCGGTCGTCCTACGTTAAGCTCTAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K15980 ACAD9; acyl-CoA dehydrogenase family member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23757 lncRNA downstream 74217 50637315 ~ 50638771 (-) True G19150
TU23756 lncRNA downstream 74217 50637869 ~ 50638771 (-) False G19150
TU23747 lncRNA downstream 90549 50622181 ~ 50622439 (-) True G19141
TU23741 lncRNA downstream 142265 50568350 ~ 50570723 (-) True G19137
TU23740 lncRNA downstream 150072 50561023 ~ 50562916 (-) True G19136
TU23886 lncRNA upstream 443137 51165358 ~ 51165675 (-) True G19259
TU23900 lncRNA upstream 478710 51200931 ~ 51212373 (-) False AMCG00017232
TU23960 lncRNA upstream 573610 51295831 ~ 51296743 (-) True G19316
TU23977 lncRNA upstream 715659 51437880 ~ 51438093 (-) True G19330
TU24212 lncRNA upstream 1825516 52547737 ~ 52548050 (-) True G19516
AMCG00017218 mRNA downstream 18797 50692600 ~ 50694191 (-) True AMCG00017218
AMCG00017220 mRNA downstream 33790 50676251 ~ 50679198 (-) True AMCG00017220
AMCG00017216 mRNA downstream 41624 50670588 ~ 50671364 (-) True AMCG00017216
AMCG00017213 mRNA downstream 49319 50656119 ~ 50663669 (-) True AMCG00017213
AMCG00017215 mRNA downstream 60034 50643410 ~ 50652954 (-) True AMCG00017215
AMCG00017219 mRNA upstream 9428 50731649 ~ 50753341 (-) True AMCG00017219
AMCG00017223 mRNA upstream 175892 50898113 ~ 50898373 (-) True AMCG00017223
AMCG00017222 mRNA upstream 194187 50916408 ~ 50955842 (-) True AMCG00017222
AMCG00017228 mRNA upstream 417617 51139838 ~ 51155195 (-) True AMCG00017228
AMCG00017232 mRNA upstream 462010 51184231 ~ 51200937 (-) True AMCG00017232
TU23267 other downstream 2218639 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 7848372 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 9495757 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 12654049 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 708634 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 723366 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 723366 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 1134025 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 2136369 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile