RNA id: AMCG00017222


Basic Information

Item Value
RNA id AMCG00017222
length 7282
RNA type mRNA
GC content 0.50
exon number 39
gene id AMCG00017222
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50916408 ~ 50955842 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGTATTTCTTATCAGTATAATAAGCTAAAACGAATAATGCGATTATTTAAGCACGTTTCTGTAGGTTAGGGACCGCTGGACGTCTTTTTGTATGCGATAGAAACtatttcctttgtgtgtgtgtgtgtgtgtgtgtgtagtgaagCACTGTTGGCACTGGCTGAGGGTCCTGCAGCGGCTCCCCACGCTGGGCATCTTCTGTTGTGAAACTTTGCATCGCTCAACTGGATGCATTCAATTATAACTTCCAAACAGCGTTTTTACAGACAGATCCGCTCATTAATACCAGCATCCAGGCGTTTGTTGAATGCGTTTAACATGCTTGTTTCACTTTCCATACATCCACACAGTTGTATGAGGAGTCTTGTCGTATAAGGGAAGTGGCGTCAGAACACATACCAATTAAACGATTTGGCTGCTCTAATTCAGCTCCATTtcaattcatttgttttatgtttcatagatatagatgcatatataaagagagagcgATACCCGGATGCTGCTTCAACTTTCGGTTTACCTGAACTACAGTCTCAGAAAAGGAAATGGCGAGAATTAAACTActttcattgattttatttttggttgcaTTGCCCTCTTGCATTTACTGTTCGAGTGCCTCCAAACTGAATATCCCAAAGGTGTTACTACCTTTAGCCAGGAGCACAAAAATCAATTTTACACTGGAAGTAACGGAAGGATGTTACAGATGGTCTTCCACCAGACCTGAGGTGGCCAGTATTGAAGTTGTTGACCTGGATGAACGTCACTGTTCTCAAAGAGCGGTTCTGCAGGCACGCTCTTCCCAACCTACTCGACTGACCAGTATTATACTTGCAGAAGACGTTTTAACTGGGCAGGTTCTCCGCTGTGACGCCATCGTGGACATTATCAGCGAGATTCAGATCGTGTCCACCACTCGAGAGCTGCACCTGGAGGACTCTCCCCTGGAGCTGAAGATCCACGCGCTGGACTCGGAAGGAAATACTTTCAGTACCTTGGCAGGACTCGTTTTTGACTGGACCATAGTGAAAGATGCAGAAACCTCCAGTTTCTCAGACTCCTACAATGCACTGCGggTGCTCAAGTTCTCAGAATCTACATACACTCCTCCGGCCTACATATCAGAAATGGAGAAAGTCGGAAAGCAAGGAGACATAATTTTGGTGTCGGGAATGAAGACGGGAAATTCCAAACTCAAAGCCAAGATACAGGAGTCGTTGTACAAGAATGTTCCGGCTGCGGAAGTAAGACTTCTGATCTTAGAAAACATACTTCTGAGCCCTGCATATGACATCTACTTACTGGTGGGAACGTCCATTCAGTATAAAGTGCAGAAGATTCGGCAAGGAAAGATTACAGAGTTGGCGATGCCCTGTGATCAGTACGAGCTCCAGCTACAGAACAGCGTGTTGGGACCGGACGGGGACGCCAGCCTGCCGGTGGCAAAACTGCACCGAGCCACGTCCACCGTCACCGCTTTCCAACATGGCCAGACCAACATAGTCCTCGACCACAAGAGTCTTCGTATGCAGGGTGCTTCTAGATTACCAAACAGCACTTTGTACGTCGTGGATCCCGGGTATTTAGgATTTAAAATTCAGCCAGGTGACAGATGGGTCCTTGAAACGGGAAGAATGTATGAAATCCTCATTGAAGTGTTCGATAAATCGAGCAATAAGATACATTTGTCCGATAACATCCGGATCGAAGCGGCGTTTCCCAAGGAGTATTTCAAGGTGCTGGAGTCATCTCTGAACGGCTCGTACCACCGAGTGAAGGCCCTGAAGAAGGGGCAGACGGGGATCGATGGGGCGCTCACATCGGTGGTCGACCAGGATGGAGGAGTGCATGTTTTCCCCATTCCAGTCCGCAACCAACAGGATGTCGAAATTTATAATCCCATAGTACTGACTCCAAGAATTTTAACATTCCCATGGCAACCCAAAGTGGGAGCGTATCAGTACACAATAAAGGCCGATGGAGGCAGTGGGAACTTCACCTGGTCCTCCTCCAATCAAGCTGTGGCGACGGTGACCGTTAAAGGAGTTATGACAACTGTCAGCGATATAGGCATCAGCGTTATACAGGCGCATGACGTTCAAAACCCCTTGCATTACGGAGAGATGAAGGTCTATGTGATTGAACCGATTGTGATGGACTTCACTCCATGTCAAGTTGAGGCCCGGGTCGGCCAAACACTAGACCTTCCTCTCAGGATATTTGGCCTCCTCAACGTGGAGACCAATGAACGGGTCACACTCAGCGACTGCTCCCATTTTGACTTGGCTGTGGAAGTCGAGAATCCAGGGGTCTTCAAGCTCTTGGAAGGGAGACTGAGGCCAGGCCAGGACTACTGTAGTGGTGTGACTGTGCAAGCTGTGGCCCCCGGCTACACCCCCCTGCTCGCAATAGATCCGGTTTCTGTTGCCCTTGTGACGCTGGGCTCATCTAAAGACATGCTGTTTGAAGGAGGACCGAAGCCATGGGTTCTGGAGCCGTCCAAGTTCTTCAGGAACCTCACAGCTGAGGACACGGACAGCGTCAGCCTTGCACTGTTTGGGCCCGCGTCTCGAAACTACTTCCAGCACTGGGTTAGAGCCACCTGCAGAGCACTGGGGGAGCAGGTTCTGGCCGTGACTGTGGGGAACCAGCCCAGCTTGACGAACCCCTTCCCTGCAGTGGAGCCCGCCGTGGTGAAGTTCGTGTGTGCCCCCCCGTCCCGCCTCACGCTGGTGCCCGTTTCCAACTATCGCAACCCTGTGTTGGACCTGGCAGCCTACGACCAGCAAGGACGCAAATTTGATAACTTCAGTTCCTTGAGTATTTTCTGGGAGTCAACGAAGGTCTCCTTAGCCAGTATCGAGCCCACAATGCCGATGGAGCTGTCTGTGAAGGAGGACAGACACGGGCAGAAGAAGCTACATGGTCGTCAGACGGTGCTGGTGCATCGCGCGTCTGGGATCACAGCCATCACAGTGTCGGCCACTGGATACCAGGTTTCTCACCTCAACGCAGCGAAAGTGAACAGTCCGTATGACCCCCTATCTCCAGTGTCTGCTACCCTTGAGCTCTTGCTGGTGGAAGATGTGAAAGTTTTTCCCGAAGCCATCACTATATATAACCACCCAGACGTGCGGGCGGAACTGGCGTTCAGGCAGGGCTCGGGGTATTTTTTTGTCAACACGAGCATTGCAGGTGTTGCAAACATTGCCTACCACGAATCAAAGGGAACAGCAGAGGTGGAAATTGGAAAGTCTGTGAAAGCTCACGTGAGAGTGTTAGACGATAACAAGAGACCCTTCTTGGCTAAATATTTTCCCTAcatgaatttgaaattaaaggcTGCATCTCCAATTATTTCTTTGttACCCCTCTCAGAATCGTCAGAAAATGATACGGCCACATTCCTAGTTCAAGGTTTAACGATCGGACAGACCAGTCTATCTGCGGTGGTGCTGGACAAAAGTGGGAAAAGAATAAATTCGGCTCCACAGCAAATTGAAGTATTTCCACCTTTCAGACTGATACCGAGGAAAGTAACGTTGATTATCGGTGCAATGATGCAGATTACTTCTGAAGGAGGGCCACAGCCCCAGTCTAATATTATCTTTTCAATGGGCAATGAGAGGATAGCGTCAGTAAATGGTATCGGCCACATCCGGGGGATTGCGGTTGGAAACGCGACGGTGACAGGAGTCGTACAAGCCGTGGACGCCGAGACGGGAAAGCTTGTTGTTGTGTCTCAGGATCAGGTAGACGTCGAGGTCGTGCAGCTGAAGGCGATCCGAATCCGCGCCCCCATCACTCGGATGAAGAGCGGGACCCAGATGCCTGTGTATGTCATGGGTATCACCAGCAGTCAGACTCCGTTCTCCTTCGGCAATGCCGTGCCGGGCCTGACTTTCCACTGGTCCGTCACCAAGAGAGACATACTGGACATCGAGACCCGCCATTCAGAGGCATCCCTGCTACTCCCTGCAGAAAACAATTTTGCTATGAATGTGCACGGGAGAACGAAGGGGAGAACGGGCTTGAAGGTTGTGGTGAAGGCTGTAAATCCAGCCTCTGGGCACCTGGAAGGCAATGTGAAAGAGTTCTCAGATGAAATACAGATTCAGGTTTACGAGAAGTTGTACTTACTCAACCCAGAGGTCCAGGCGGAGGAGATATTGATGTCTCCAAATTCGGTACTAAAACTTCAGACCAACAGGGACGGTGTTGGGTCCCTCACGTACCGCGTGCTGGACTGTCCGGAAAAGGCCGCGTCCATCCAGGTGGACGAGAAGGGCCTGCTGTCCTCTGGGTCGCTCACCGGCACGTCCTCCCTCGAAGTCACTTCCCAGGAGTACTTTGGAGTCAATCAGACGATTATTGTGGCCGTAAAGgtAGTTCCAGTCTCCTACCTGAGGTTCAGCACCAGTCCTGTGCTTTATACCGCAAATAAGGAAACCCTCACTGCTCTTCCTCTGGGAACAACCCTTACGTTCACCGTACACTTCCACGACAGCACCGGGGATGTCTTCCACGCCCATAACTCGCTCCTGACCTTCGCCACAAACAGAGATGACCTTGTACTGGTTGGAAAAGGGCAGAGTAACAACACGTTTGTCGTGCGGACGGTCAACGTGGGCCTCACCCTGCTGGGCGTGTGGGACTCAGAGCAAACCGGAGTGGCTGACTTCGTGGCCTTGCCGGTGCAGCACGCCATCCACCCTGAGGAGTCGGAGACGCTGGTGGTCGGTGATGTCATCTGCTTTAGCACGCTACTCGTTAATCAAGAAGGTGCTACAGGAACGTGGTCTTCCTCTGGGAGCATCCTGCAGGTCGATCCAAGGACGGGAGCAGCCGTGGCCAGAGATTCGGGATCTGTCACCATTTATTATGAGATCCCCGGCCAGCTGAAAACCTACAGAGAGGTGCTGATTGCCGGCGCTGCGAGGACGATGGTCATGACGCACACAGGCACGGCGAAGAGCGCGGGAGGAGAGAGCGTGTCCCGAGTGCTCGTTACCACCCGGGAAAAAGGCACCAATTTAATAGGCCAGTGTTCGCCAGCTCAGATCGAAGCCATCGCCGAGCTCAGCCCCCAGTCGAGCATCGGCTGTCAGCTCCAGTTCAGCAGCGAATCGATTGACTTCTCCGCCCACGACGTGTTCGCCACGCAGACGGGATTCGATACGAGCACAGGTTTCTACTCGTGTGCGTTCAACATGCAGCAGCTGAGTGACCAGCAGCTGAAGGCCCTCAGCATGACCAGGACGGGGGTCATTGTCAAAGCTGCCGTCCAGGGGAGCCACTTCTCCGGAGAGCAGCTGGGCGCCCAGGTGCCCTTTAACCCCGGCTTCTACGCTGACCAGAATGACATCCTCCTGAGCAACCAGCACCCCGCCACCGACGTCACGGTGTACGGAGACGCGGAGGTCCTCGGCCGCCTGGAGGTGACCACTAGCTCCCCAGTCATCGTCATCCAAGAGAAGGAGGTCTCCTATGGGTTTCCGAGCTTCGTGAAATACACGGTCAGCATCTCCGACCCCCGCCTCGTGACTCAGGGGGCCATAGCGGCCAGGATCTCCATATCGAGCCCCCAGACCGACCAGGCCATCGGCATCCCTGTGACCGTGATGCACGTCACCGATCGAAGCACGGCCATGCAAGCCGGGGCCCCGCTGGCCGGCTCCTGGGAGAGCGCAGGTCTGTTCCAGCAGTTCATCGACTCCTATCAGGTGATGTTCTTCACGCTGTTCGCCCTGCTCGCCGGCACGGCCATCATCATAATTGCCTGCCATGCATTTTTCTCACCAAGGGAGCAAGTTTATCACCCTGCGTTTGTCCAGAGGACTCCTTCTCACCCAGGTTATGGTTCGCCTGCCTTAAGCCCCTTCAACAGTACAGTCCCGTCCGACTTGAGAAGCAGCCCGAAGCTGCGGCTCTTCACCCCCGACTACCCCCCCGACTCGCGATAAGAGTCTCCGGTGGCGCTGTGAGGAATGTGAAGGGCTTTCGACCCTGTATTTAAAGCCAAGGACTGAAAGTGCCTTTCTCATGACATCTGAAATGTCCGGGGGTCCGTTTTTCTCCTCTGTTTTAAAATCCCCTCCCTATTTTGCATACGTTGcatcaaatgtattaatcttaAAATGGTGCACGTTATTTACTAACTGGACAGTTAGCAATTGAACTGTTTTTGACTAATCctacaaaacaaataagcatGTTTGTGAAGCCTAATGCAATCCCGCCTtgagttttgttgtttgtgtggtacattttttgttgaatAGTAATTTAGATTTTACTTCATTTGAATGGCTTTGCaatatttgacatttgtttcattttaccATTTACCATTTATGAACATTTACCAAACCTTTTTTCCGATATGTGGTTCTAAAAGAAACTTTACAATGTGACTAAGACTTATTTGACGTTAAACGCTGGTTGTGATATAACTCAGGAACTTAATGCACTGAAGTCCAATATGGTGCAAACTTTCAAAAGCAGGCGCGCCAGATCGTAATATTGTGTGTAAATAGTTGAGaatgctttgatttatttttgtattgcggtgaatattattttcagtgatgTGAGTAATGTGAAAGCTCAATCCATCCGTAAATGgctcagtttatttaaaaataataatgtgatattaGTAAACGCCAGAGCAAAGGTAAAGTAACACAAGCGTTTTGTGAAATtcaaaccaaatcaaatctaaGTGTTATTTATGTTCCATTCTGGTGAGTTTGGCAACCTGTAAGAGGAGAGAATTTCCTCGATGCCTTAACAGTATACCTCGTGAATTGTCGAGCCCGAATCGCAGCTATTTTCCGTGTGTGAAATCTGGTAATGTGAACGTTTGAACTGTGAGTCCTTGTCTCTCGCTCTTCTCCTGTCCATGTCCACTAGACACGCCTATAACAAGAGACGAGCAAAGCTAACATGAAGAAACCGCTTCTTGAACGAGCCTGTCATTGTGCCAGTCGATATATTGGAAAAAAgttatacaataaatatattctgtCCAGTTTAAACTGTCTGTACTAATGTAACTTAAAAGCCTGCCAAGACCCGAAGTGTTGGATTTAAGTCTGAATTGTTGGAAAAAGGTGAATTGTGTACTTATCAGAGCCAACATTGTTGGCATTTCAATGGATATTGTGTTCATAATAGTTTCATTTTTAGATCTGCATGCATGAAAAAccaacagctgtgtgtgtgaagcacTTAaaccgatttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K14314 NUP210, GP210; nuclear pore complex protein Nup210

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23757 lncRNA downstream 277637 50637315 ~ 50638771 (-) True G19150
TU23756 lncRNA downstream 277637 50637869 ~ 50638771 (-) False G19150
TU23747 lncRNA downstream 293969 50622181 ~ 50622439 (-) True G19141
TU23741 lncRNA downstream 345685 50568350 ~ 50570723 (-) True G19137
TU23740 lncRNA downstream 353492 50561023 ~ 50562916 (-) True G19136
TU23886 lncRNA upstream 209516 51165358 ~ 51165675 (-) True G19259
TU23900 lncRNA upstream 245089 51200931 ~ 51212373 (-) False AMCG00017232
TU23960 lncRNA upstream 339989 51295831 ~ 51296743 (-) True G19316
TU23977 lncRNA upstream 482038 51437880 ~ 51438093 (-) True G19330
TU24212 lncRNA upstream 1591895 52547737 ~ 52548050 (-) True G19516
AMCG00017223 mRNA downstream 18035 50898113 ~ 50898373 (-) True AMCG00017223
AMCG00017219 mRNA downstream 163067 50731649 ~ 50753341 (-) True AMCG00017219
AMCG00017221 mRNA downstream 194187 50712988 ~ 50722221 (-) True AMCG00017221
AMCG00017218 mRNA downstream 222217 50692600 ~ 50694191 (-) True AMCG00017218
AMCG00017220 mRNA downstream 237210 50676251 ~ 50679198 (-) True AMCG00017220
AMCG00017228 mRNA upstream 183996 51139838 ~ 51155195 (-) True AMCG00017228
AMCG00017232 mRNA upstream 228389 51184231 ~ 51200937 (-) True AMCG00017232
AMCG00017233 mRNA upstream 342518 51298360 ~ 51327317 (-) True AMCG00017233
AMCG00017235 mRNA upstream 388517 51344359 ~ 51363221 (-) True AMCG00017235
AMCG00017236 mRNA upstream 409347 51365189 ~ 51411576 (-) True AMCG00017236
TU23267 other downstream 2422059 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 8051792 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 9699177 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 12857469 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 475013 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 489745 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 489745 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 900404 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 1902748 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile