RNA id: AMCG00017228


Basic Information

Item Value
RNA id AMCG00017228
length 2639
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00017228
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51139838 ~ 51155195 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGTATCCACTTTAATTTAAGGAGGAACCTTTCCTTCCCCAAAGTGGCATCTGTCCCTCCCGTCAATGCGATCCGCggccacagacagacatactGCGCATACAATGCACAAGATCAATCAATTCAAATCAAAAAGAACATCTTTCTAAGACCCTTCAGGCCgactatttattaaaacacagtgGCTTAATGGTTGCAGCTTTGCACGACACAGATGCCGCGCTGACTGGGACAGGACAGCACAGCTGGCACCGCGGCCGGGGAGCGCAGAGCCGGCGATGCTTGAGCCCTGGAGACTGCTGACCCACAGGTGAATGGGACTGCAGACGAGAACACGCCCTGGTGGAGGAGGTAGATATAGAGGACCTGCGGAAGAGCTGGCACTGTCTGTGGGCTGGAGATCTGCACGGCACTAACGCAGGGACATCTGCCGAGTTACCTGTGGCATCTCACTGGGAGAGGCGCCGGACACTACCGCTCCTGTGATTCACACTGGGATGTACAAATAGCACTGCCGGCGTGTGTCGTGTCTATACACCCTGATCTGGAGGTAATCGGCCTGGGACTAGACAGTCAAGAGTCTgcaatagtattttttttgctACACACAACATTGGAAAAGGGCAGCACCATGAACAGGAAGACGCGACGCTGGATTTTCCATATCTTTCTGTGCCTGGGGATTGTGTATCTCAAAATTGGGGGCTTCTCCTCCGTGGTTGCGTTGGGAGCGAGTATAATCTGTAACAAGATCCCAGGTTTGGCCCCTCGACAGAGGACTATCTGTCAGAGCAGACCTGACGCCATCATCGTGATTGGGGAGGGGGCCCAAATGGGAATCAACGAATGTCAGTTCCAGTTCAAAAACGGACGCTGGAACTGCTCAGCCCTGGGGGAGAGGACGGTCTTTGGAAAAGAGTTGAAAGTGGGAAGTAAAGAGGCAGCATTCACCTATGCCATCATAGCAGCTGGCGTCGCCCATGCCATCACCGCTGCCTGCACCCAGGGCAACCTGAGCGACTGCGGCTGCGACAAGGAAAAGCAGGGATTTTACAACCAGGAGGAAGGCTGGAAATGGGGTGGCTGTTCTGCGGACATCCACTACGGCCTGAGATTCTCCAAGGTGTTTGTGGACGCCAGGGAGATCAAGCAGAACGCGAGGACGTTAATGAATCTACACAATAACGAAGCGGGACGCAAGATACTGGAGAAGAACATGAGGTTAGAGTGCAAATGTCATGGGGTGTCGGGGTCGTGCACGACCAAGACCTGCTGGACGACTCTGCCCAAGTTCCGAGAGCTGGGCTACATCATCAAGGACAAGTACAACCAGGCCGTCCACGTGGAGCCCGTGAGGGCGAGTCGCAACAAGCGGCCCACTTTCCTTAAGATAAAAAAGCCGCCTTCCTATCGCAAGCCCATGGATACAGACTTAGTATACATCGAGAAATCACCCAACTATTGCGAGGAGGACCCAGTGACAGGCAGTGTAGGAACACAAGGCCGAATATGTAATAAAACAGCCCTGCAGGCCAACGGCTGCGACCTCATGTGTTGCGGCCGAGGCTACAACACGCACCAGTACTCGAGAGTGTGGCAGTGCAACTGCAAGTTCCTGTGGTGTTGCTACGTTAAGTGCAACACGTGCAGTGAAAGAACAGAAGTCTACACGTGTAAATGAGATCTTTATACGATccccacacacagccacacacatgCAGAAGTTGTGAGTCCGtgtgtgttcattatttttctgatgGGGTTCTGTTTTGGTCCCCtggaaaactaaacaaactaaacacTTCATTTGGACTCCAACGTATGAGCTGCAGTCGGCAACGGATGACTTTCCCTCCGCTAGAATGGAAATCCACCGAGTCCCTTTGCTGTGTGCAGGGCTGTGTCAAGACAAACGGCATTGACAAACACTCAAGGGAAAAGACGACGTAATGTTCTCGAGGACAGAATATATTATTGCAGCTGACATGGACCGAGAGAACAGTGGCTTTGCAGAGTAAGAGACTTATGGTAAAAACGCAGACCTCCGATGGGAACCTCAATGCCGGCAGGTTAACAGTGTCCCTGGTGCTTTCACTGTGGATTATGCAGATGGAGGGTTTTTGACGTCTTTTACTCTATTTGACAGGATCGCATATGGATTGACTACAAATGTAACTGTTCAGTTTCCACTAGAGCCCAGATCAccactatatatttatatttatatagtgatggtccaggattttgttttttaacccgCACGTACATTTTTGGGGACTTGTTTGGAGGACAATTGGGACATTTTGGcatgattttaaattgaaactgtaattgcaatatttaacatattatttagataaaaacaacaaatattaatttatttcattaactACTGATTTTTTTACGGGACTATCCTACATTGAGAGTAGATAGTAGGATTTCCTCGTGGAGCATTTTTTGTTGGTATTGTTTATAAATGTAGcaaagatgacaaaaaaaacaatacactggATCTGTATATAATAGGTCTTTATCAGATACAActgatacatttataaatatatgtatgtgtgtgtgtatatatttacacacatacagctctggaaaaaattaagagaccacttaacattgatttctg

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0045165 cell fate commitment biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00572 WNT7; wingless-type MMTV integration site family, member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23757 lncRNA downstream 501067 50637315 ~ 50638771 (-) True G19150
TU23756 lncRNA downstream 501067 50637869 ~ 50638771 (-) False G19150
TU23747 lncRNA downstream 517399 50622181 ~ 50622439 (-) True G19141
TU23741 lncRNA downstream 569115 50568350 ~ 50570723 (-) True G19137
TU23740 lncRNA downstream 576922 50561023 ~ 50562916 (-) True G19136
TU23886 lncRNA upstream 10163 51165358 ~ 51165675 (-) True G19259
TU23900 lncRNA upstream 45736 51200931 ~ 51212373 (-) False AMCG00017232
TU23960 lncRNA upstream 140636 51295831 ~ 51296743 (-) True G19316
TU23977 lncRNA upstream 282685 51437880 ~ 51438093 (-) True G19330
TU24212 lncRNA upstream 1392542 52547737 ~ 52548050 (-) True G19516
AMCG00017222 mRNA downstream 183996 50916408 ~ 50955842 (-) True AMCG00017222
AMCG00017223 mRNA downstream 241465 50898113 ~ 50898373 (-) True AMCG00017223
AMCG00017219 mRNA downstream 386497 50731649 ~ 50753341 (-) True AMCG00017219
AMCG00017221 mRNA downstream 417617 50712988 ~ 50722221 (-) True AMCG00017221
AMCG00017218 mRNA downstream 445647 50692600 ~ 50694191 (-) True AMCG00017218
AMCG00017232 mRNA upstream 29036 51184231 ~ 51200937 (-) True AMCG00017232
AMCG00017233 mRNA upstream 143165 51298360 ~ 51327317 (-) True AMCG00017233
AMCG00017235 mRNA upstream 189164 51344359 ~ 51363221 (-) True AMCG00017235
AMCG00017236 mRNA upstream 209994 51365189 ~ 51411576 (-) True AMCG00017236
AMCG00017234 mRNA upstream 275492 51430687 ~ 51435239 (-) True AMCG00017234
TU23267 other downstream 2645489 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 8275222 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 9922607 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 13080899 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 275660 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 290392 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 290392 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 701051 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 1703395 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile