RNA id: AMCG00017232


Basic Information

Item Value
RNA id AMCG00017232
length 2776
RNA type mRNA
GC content 0.55
exon number 11
gene id AMCG00017232
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51184231 ~ 51212373 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGGCCGAGCTGCGACAGCCGGCCGCGCCGCGACTGCACCGAGCGGAGGATGGAAATCCGGACGAAACGCAGCGCGGAGTCCGCACAAGCCCGGGGCCGGCGCTCGGACACGGGCGCCCAGTAGCGCGATGATCCTCCCTCTGAGTCGCCATGCAGCGAGAGCACCAGACCCGGGCTGTGGAGGCAGAGGGCAACGGAAAGGCACTTCCATGGCAGCCGGTGTTACTCTGTTGAATGACCTGCCTTACTCGACAACTGCGGCAAACGGTGACGATCCCAATCCAGAAATGTTACCAGCCTTCGAAGCCGGTGTCGGCACAGGCAGAGAGCGAAGGAGGATTGTCGAAATGCAGGGTCCCGGCAGAAGGTCCCTCGCGGTGGATTTTCTGAGCGGTTTCCGGAAGAGTCGCTCGGCCTCGGACGTGATCCTCAGAGGGGTCCAGAGGCGGCGCAGCACGGCCCTGGAGACCCTGTCCTCATCCACTCACCGCGTCATGGTGGCGGTCAGCATTGCCGAGGCTCACACGGACTTCAGAGGAGGGAAACtaAGCACCAGAGTACCAACCGCCAAGTACACCAAAGTGGGGGAGACACTGCGGCATGTCATTCCCAGCCACATGCAGTGCTCGATGACCTGCGGAGGGCGGGCCTGCAAGTACGAGAACCCATCCCGCTGGAGCGACCAGGAGCAAGCCATCAAAGGACTCTACTCCTCATGGATTACAGACAACTTGCTGGCTATGGCAAGGCCTTCAACGGAGatcattgaaaaatataacattattgaGCAGTTTCAAagGTATGGAGTAAAGACCGTAATTAATCTGCAGCGCCCGGGGGAACACGCGAGCTGTGGGAATCCGCTGGAGCAAGCGAGCGGTTTCACCTACCGGCCGGAGACGTTCATGGAGGCTGGAAtttatttttataattttggaTGGAAGGACTATGGTGTGGCATCACTTACCACTATCCTTGACATGGTGAAAGTCATGTCGTTTGCGATCCAGGAAGGGAAAATGGCTATTCACTGCCACGCTGGGCTTGGAAGAACGGGTGTTCTGCTAGcctgttatttagtttttacaaCACGGATGAGTGCTGACCAAGCCATTCTGTTCGTACGGGCAAAAAGACCCAACTCAGTTCAGACCCGAGGACAGTTATTGTGTGTCAGGGAGTTTGCTCAGTTTCTCACTCCCCTAAGGAATGTGTTTGCCTGCGCCGAACCCAAAGCCCACGCCATCACCCTGTCCCAGTACTTGATCCGCCAGCGCCACCTGTTGCACGGCTACGAAGCGCGGCAGCTCAAAAATGTGCCAAAGATTGTCCAACTGGTCTGCAAGCTGCTGCTGGACATTGCTGAGAACCGGCAGGTCATTGAAGAAGAGATTTTAGAGATTCCAGACCTCTCAGCTGAGATTGAGAAGACAGTGTCTCAACAGGCCATCCAGCAGCTGGACAAAGAGTTAATTGGGAAAGGCATTCCTGTGTCCTCGCCGCGTCTACCCAAGCTGCCATCAGCTGCACCCAGCAATTTTGGGCTTTCCAGCGAGCATGAACTGAACCCGCTCTGGGGGCGTCGCCAATCCCTTTCTTACCTTAGAAAGCGCCTTAGCTACAGTGACTCTGACCTGACGACTGTTGGGTTAATAGTCCACCAAGGAGGTCCCCCTCTGACTGTGCCTACCAACGTGCTCTACTCCAGCCCGCTCAGTAAACAATGTCTGTCTCAGAACAACCTAGTACAGTCCTGCGACCCGGCAAAGACGCAGTTCGCTCCCTTTCAGAATGCCCAGAATGGCAGCAGAACACCAGACCCTCTATTCGGTTCGTCCACGAGTGTTTGGGACCAAAAAAAACTCATTAGCACAGTTGAACAAAGACCCGGATCTCCCCTTTTCCAAAGGCGGAAACATCCAACAGAAGTGCTGCGTAGCAGGACCTTCTCACTGGGATCCATGGAGAAGAGCGAGCGGCTGGAGAGAGCTTGGAATCGATCCGAAACCCAGGACAGGGGAAACACGGTGAATGGTCAATATGCTTCTTGCGCTGAGAGAAGAAGCAGCTCCGAGGTGGCTCATGCAGCGTTCGCAGACGAAGACAGATCAGAGGAGATCCCCTGCATCACTCTACAGTCAGAGCTAACGCTGGACTCCAGGAGGCTGCTGGTGGCCCAGGCACTTGCCGTTGACATCGACtgtgaagaagaggaagacCACAAGGAGAGAGTTTTAAATTGGCAGATTGAGCTTAACTCCAGAGAAGGCGCCTGGGAGAGGATCTGCACAGAGCGAGACCCTTTTGTCCTGTCCGGCCTCATGTGGTCCTGGCTGGAGCAGCTGAAGGAACCGATAATAACCAAAGACGACGTACGAACATTAGCAAAGAAAAGCAGTGACCCTCATACTGCCCTTTACTCACTGGACAAGGGGCCTCAGCAGACCCTGGTCTGTATAGTGGACTGTATTGCACGGGTACAGACGATACCAGAGGAAGTGGAAGAAGCTTTTCTTGAACGGTGCATAAAAGCTTTTAGCAAGATTGGATTGGATTCAGATGATGGGCCGATGGTTTATAAAACCCTGAAAACAATCTTAACACCAGTCCTGTCTGAGATGAGAAAGCGAGCTATGGCCGAGGCAGAGGATCCGTGTTACTGTGTACACGTCCCCTGAGCCCTCCGCAGcactgtgtgtgcatgcgtctgtgcgtgagtgtgtgtctgtgtgagcgtgtgtgtgtgcgcgtctgtgtctgtgtgtgcgtgtc

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K18078 PTPDC1; protein tyrosine phosphatase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23886 lncRNA downstream 18556 51165358 ~ 51165675 (-) True G19259
TU23757 lncRNA downstream 545460 50637315 ~ 50638771 (-) True G19150
TU23756 lncRNA downstream 545460 50637869 ~ 50638771 (-) False G19150
TU23747 lncRNA downstream 561792 50622181 ~ 50622439 (-) True G19141
TU23741 lncRNA downstream 613508 50568350 ~ 50570723 (-) True G19137
TU23960 lncRNA upstream 94894 51295831 ~ 51296743 (-) True G19316
TU23977 lncRNA upstream 236943 51437880 ~ 51438093 (-) True G19330
TU24212 lncRNA upstream 1346800 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 1448071 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 1479016 52679953 ~ 52691186 (-) True G19551
AMCG00017228 mRNA downstream 29036 51139838 ~ 51155195 (-) True AMCG00017228
AMCG00017222 mRNA downstream 228389 50916408 ~ 50955842 (-) True AMCG00017222
AMCG00017223 mRNA downstream 285858 50898113 ~ 50898373 (-) True AMCG00017223
AMCG00017219 mRNA downstream 430890 50731649 ~ 50753341 (-) True AMCG00017219
AMCG00017221 mRNA downstream 462010 50712988 ~ 50722221 (-) True AMCG00017221
AMCG00017233 mRNA upstream 97423 51298360 ~ 51327317 (-) True AMCG00017233
AMCG00017235 mRNA upstream 143422 51344359 ~ 51363221 (-) True AMCG00017235
AMCG00017236 mRNA upstream 164252 51365189 ~ 51411576 (-) True AMCG00017236
AMCG00017234 mRNA upstream 229750 51430687 ~ 51435239 (-) True AMCG00017234
AMCG00017239 mRNA upstream 262576 51463513 ~ 51476059 (-) True AMCG00017239
TU23267 other downstream 2689882 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 8319615 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 9967000 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 13125292 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 229918 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 244650 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 244650 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 655309 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 1657653 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile