RNA id: TU23976


Basic Information

Item Value
RNA id TU23976
length 2106
RNA type TUCP
GC content 0.40
exon number 3
gene id AMCG00017234
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51430687 ~ 51435239 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATATTCCAGAGATCTCGGAGTGGCCGTGGTCGCCGCAGCGCCAACCCCATCAACTTAAACCATTATGCCAACAAGAAGAGTGCGGCGGAGAGCATGCTCGACGTGGCACTGCTCATGGCAAACGCGTCGCAGCTGAAGGCCGTCATTGAGCAGGGGCCGGACTTCAGCTTCTACATCCCCCTCATCGCCCTAATCAGCATCTCGCTCACGCTGCAGATCGCCGTGGGGGTGCTGCTCATATTCATCGTTCGGGACAATCTgaatgatgaaaacaaacaaatccgaCTAAACCTACTCAACAACATCGCCACGGGGCTGGTCTTCATCATTGTGGTTGTGAACGTCTTCATCACAGCGTTTGGGGTTCAGAGACCCGTCACACCAAGCAGTTCACCATAGACTGGAGCTCACAGGTGCTGGACACCTGGACTCGAGcagCACTAGTACTGAatctgcagagagagcaggggaCCGAAGGCATTAGACACTCACCGTCAGACCTGAACACCACTAGTTCTACCTGCAGAACCTGGACATTgaccttcaacctatttaccaCCAACTCAGAAGCtgactgaattgacttaaattaaggcaaactacagacaagattaacttcagtTAACTAATCCTTCTGTTTCAGCACAGCTTGCTCGTTAAGTATATACACTCTTGTATATAATGGTAAAGAATACATTGCATGGAAAAAGGTCATACAAACCGCAAAACGGTATATTTACCTTAGGCCTCCTGTGGCCTAAAGAATACAGCGCTACACCAAATTAATACCAAATAACCTTTACAagcttgttttcatttgctgtTTAAACACACCTCAACGATTGCAATATAACAGgccttttttaataaaaaaggaacataaATCACAGAGACGGGTCAATTTATGTTCTGTTATATTCTATATTTGCTTTAACGTCTTGCAAGTCTTTAGAGTTAGGGCTCCCCCTAGGGTGGTGTTAGTGCCATACAGTTTATTTCTGCTAAATCAGTGAAGCAGAGTTCAGCAGTTGCCTTTCTTGTTGGTTTTATCTATGCACAACACTTACAAATACATGGTGCAAAACTAATCAATGACTGATGTTTACTACATGATGTAATTGCTTCTACTGAGACATTTTCCTGCATCATTAATTTATATCagcttttataataattatgcaaCCCTCTGCCTTACATGTTACTGatcagtattcattttttaaaaggccAGTAGCCTACTAGTCACAACTCTTATTTTCctacagtttcttttttaaatatagataattttaatttttttatcatgaaaataagaaaaagctgAAACTATGAGTTCGACTTGAAGTTGCAAAGCTATATTCAAGTTGTACAAAatgaacatattaaaaaaaacttttatgaTGCAGTCACTTCATAACAAGGTGGAATCAGAACtatgaaataacaaataaactatGCACTTTGAATTGCTGTCGAACATGTTAGCAATATTATGAGCTTGCTGTCTGTGACAGTGGGCGCAGTTTATCTGTTCTTATGAAGTACAAAAGAATGCACAAAAAGTCCATGTAAGTTAACGTGTTTAGATTGGGTTGCTTCAGTTAGCTTTGACTCTTATTATTGATGTTGTGAAATGTATCGAGTGTACATATCAAGTTGTATTATTCTCTAGTGAATGAGGCGTCTTCCAACTTTCTACACCTTTTACCTGCTTTATAGGGCGAAAGCTTCGTCCCACTCAAAAAGGGTTCCTCTTTGTATGAAAGAATAAATATGCAGGTGTTGGATAAAGGTTTTACATGACCAACGGGCAGCGATGtgatttattaaatcaaattgaaaacCTGCTTTTCCAGGCTCTTAATCTGTAACACCTGGACCTAATTTCCTAGTCTCCCTGTCCGTGATGACACTGAACATCCTGTTGGTGCAACGGGGGTGGACAGCGCTTTCGCTGCTCATCTTTGGATGTCATGAGGTTTCTGTGTACACTGACATTTGAGGCatgttatgtatataaaatgtaatttgtggtTTACTTTTCTGGGGACCAAGTAAGTAAGCTCtgattcagatttttattttgttttatttaaaagtaatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23960 lncRNA downstream 134112 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 218482 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 265180 51165358 ~ 51165675 (-) True G19259
TU23757 lncRNA downstream 792084 50637315 ~ 50638771 (-) True G19150
TU23756 lncRNA downstream 792084 50637869 ~ 50638771 (-) False G19150
TU23977 lncRNA upstream 2812 51437880 ~ 51438093 (-) True G19330
TU24212 lncRNA upstream 1112669 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 1213940 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 1244885 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 1333834 52768902 ~ 52769415 (-) True G19604
AMCG00017236 mRNA downstream 19279 51365189 ~ 51411576 (-) True AMCG00017236
AMCG00017235 mRNA downstream 67634 51344359 ~ 51363221 (-) True AMCG00017235
AMCG00017233 mRNA downstream 103538 51298360 ~ 51327317 (-) True AMCG00017233
AMCG00017232 mRNA downstream 229918 51184231 ~ 51200937 (-) True AMCG00017232
AMCG00017228 mRNA downstream 275660 51139838 ~ 51155195 (-) True AMCG00017228
AMCG00017239 mRNA upstream 28445 51463513 ~ 51476059 (-) True AMCG00017239
AMCG00017240 mRNA upstream 61151 51496219 ~ 51525354 (-) True AMCG00017240
AMCG00017242 mRNA upstream 136288 51571356 ~ 51605585 (-) True AMCG00017242
AMCG00017244 mRNA upstream 188984 51624052 ~ 51627775 (-) True AMCG00017244
AMCG00017241 mRNA upstream 232480 51667548 ~ 51685160 (-) True AMCG00017241
TU23267 other downstream 2936506 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 8566239 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 10213624 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 13371916 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 13371916 38054665 ~ 38058939 (-) False AMCG00016959
TU23984 other upstream 10519 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 10519 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 421178 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 1423522 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 1948272 53383340 ~ 53387709 (-) True G19730

Expression Profile