RNA id: AMCG00017237


Basic Information

Item Value
RNA id AMCG00017237
length 3088
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00017237
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51653530 ~ 51663841 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAAAGCTTGCATAACCCCACTTATGTTTGCCTGGATTACCAACCCACTGAGCAAATTGCAGGAATGGCACCAGTGCCCAAAGTCCAGCTGTCCGGAGGCCTCGAAATCTGTcgtattttaaatggcatgtGGCAGGTATCTGGGGCTCATGGACCCATCGACTCCGCTAAAGCAGCCAAGGCAATGGATGCTTATGTCAATGCTGGACTAACATCTTTTGACATGGCTGATATATATGGACCAGCAGAAGAGATATTTGGAAGCTTTTATAGCCAGCTCAAATCCAGACAAGGCGCAGAAGCTGCCGCGGGAGTCCAGGGCCTGACCAAGTGGGTTCCGCGTCCAGGACCCATGACAAGAAAGGGCCCTGTTTCCCGCTTTGAGGACAGATGTGCAGAAGGGGCTGAGGTGGCAGAGCATGCTGTGGACCAGTCCCTGAGGAGAATGTGTGTCGAATGCCTGGACTGTCTGCAGTTTCACTGGTGGGATTACAGTGATAAAAGATACCTGGATGCACTGGGGCATCTGTCAGATCTCCAGCAAGAGGGGAAAATAaAGGAACTTGCGCTCACCAACTTTGACACCCAACGTCTGGAGGAGATCACCAGCAAAGGTATCCACATCTCCAGTAATCAAGTCCAGTACTCGCTGATTGACAGACGGCCGGGGGTGAAAAtggcaaagttttgtcagtctgAAGGAATTCAACTCCTGACGTATGGAACTCTAGGTGGTGGTCTGATCAGCGAGCGTTACCTGGGGACTGGGGAGCCCACGGGCCGAGGGCAGCTCAACACGGCCTCCCTCAGCAAGTACCACAACATGATCAAGCTGTGGGGCGGGTGGGGGCTCTTCCAGGAGCTGCTGTCCACGCTGAGCTCTCTCGCCCAGACCCGCGGCTGCTCCATCGCCAACGTGGCCACCAGCTACGTCCTGGACCAGCCGGCCGTGGCAGGGGTGATCGTGGGCTGCCGTCTCGGGGTCCCTGGGGCTGAGCACATCGCGGACACACTTGGGACCTTCCAGGTCCGCCTCTCTCCGGCCGACATCGACGGTATCGAGAGTGTGTTGGGCCGCTCGAAGGACCTAATGCTCACGGTCGGGGACTGTGGCAATGAATACAGGAACTAGAGGAGACAGGATTCGGGGCAGGAGGACCCATTCCAACGTAACTTGTACAGTGCCCACGTGTGACCAGAAATGTATCCGAAATGCCCCAAGGTCATGTGCACATACatgtgaacaacaacaaaaaaggctgTGCTTACTAACTCTGTGTGCATTTACTGACTGAGTAGTTAGCTTTAGTGTGATTAATATAATCTACAATCAGTTTATCTGTGTTTAAACCACTAGAGGCTGTTAATTTCCCATTCAGTCGTACCTGTTCTCATTGGGTTTCTGTTATGGCACCAAATCAGTTTAATTGTTGTGCAGCTGTTAAAACAAGCTCTGCTCTctgtgatgcattttaaatacaaaataacacttGCATGCGATTGACACAGCTTTAATACACTAAAAAGGTCATTTGAATGTTGTCACACAGTAACGCATCCCTTCATTTCCTATAAAAAAGAAGTAATTCAGctaaagaaacataagaaagtgtgcAATCGAGAGGAGGCGCAGAACATACAGGGAGACtggagtgttttcttttttctttgtaactCAAAGGATAAGTAAATGTGAATTAACTCTGGGGCAGAAGGGATGGGGGTGCTGAGACTTAAAGAGGAAACCGAGATTTGACGTAGACCGGATCGAGCAGCTGCACtctaatgagagagagacaagtgCATGCAAATGCATCCGTTCAGTGCGAGCCTCGTAGGAAGGGTCCTCAGGCAATATTGGCCATGAACGcagcttttctgtctttttattgGACGCTGTTTAATACAAAGCAGCCCCGTCTCGCTCGTATGATCTGTATCAGTCGTGACGTTGCTGTGTGTGCGATCTGTTTTACAATTCCCTGGGCATCGCCTCGCCTGTCGAAATACTGCGGCCGTCCTTCGCCGTCTGAAAAAGCAGGGATACGACCATACCCTGTTGTGTACATATATCAGGGCAGCTTTAATAAGGTTAAAACATTTGGGTTTTGTGCATTTGTTCTGAAAATGCATGAGATGGTTGTGAAAAACACCCTTATTAGAGATGAGTCTAGACGAGTGATAAAACAGTCAGGTGACAAGGAAGAGAAATCCCCAGGTCGTTCCTTCCTCAACCTTTTACCCGGTGAATGGTGGCGTTATCTGAAACTGCAGAACTTAATCATCAACAATGGATGcggattattaataataataataataataataataatttcttggcagacacccttatccagggccacATTTGAACTGGAGTATGTTATTCAAAATGTTCTTATTGCATTAATCACAGTATTTCacaattatatttcaattgaaaacaaaagtgaaacaatTGTAGAGTGTCTGGGACTTTCTGTTGCATTTAGATTGCAGTATTTGTACATGAACAGAGAACTGTCAGCTGGGTGTCATAAAACGATTGTTCTCACAATTGCatgttgtattaataaaacagggTAGGTGAAGACAGGACAGACAGGACTTCAGAAAGGTACTTCTGCTTGATCTGGTTTAGAGTCCTTCGCTTCACATGCATTTGACATGGTAAGGGTTTTGTCTCTCTGATGGTTTCCTGTAGGATTGTTGGCTTTCATTTGTGacgaaaatataataaaaatgtttgtgacaGCATATATTGTACAGGTATTACACTGAGTTTTTAGGTCATATATTACTTagcttttaatgttaaaaacacatttttaaagaatttgGCAACCGAGTTCTGTTTTGTACGTACTTTACATTATGAAAAGTATTATCTACAGGTTGACTTTTGCAGATGACGCAAGATATTGTCGTAAATAACACTTTCTATATCTCTCTGAATGGATTGTTAAAGGGGAACTCTGGCTTTGTTGATGTTTACACTTCATCAGTTAAgagtaaaaacatatattcCAAGGAAAgaaatacaccaatcagccataacattatgagcactgacaggtgaagtgaataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24023 lncRNA upstream 81536 51565289 ~ 51571994 (+) True G19366
TU23921 lncRNA upstream 313413 51339913 ~ 51340117 (+) True G19292
TU23904 lncRNA upstream 356812 51295832 ~ 51296718 (+) True G19275
TU23870 lncRNA upstream 514695 51137293 ~ 51138835 (+) True G19245
TU23810 lncRNA upstream 925379 50727740 ~ 50728151 (+) True G19195
TU24151 lncRNA downstream 443107 52106948 ~ 52116341 (+) True G19465
TU24211 lncRNA downstream 883908 52547749 ~ 52548031 (+) True G19515
TU24295 lncRNA downstream 1133091 52796932 ~ 52802211 (+) True G19588
TU24301 lncRNA downstream 1187090 52850931 ~ 52854722 (+) True G19591
TU24335 lncRNA downstream 1194312 52858153 ~ 52863723 (+) True G19617
AMCG00017238 mRNA upstream 4012 51647404 ~ 51649518 (+) True AMCG00017238
AMCG00017243 mRNA upstream 12915 51639637 ~ 51640615 (+) True AMCG00017243
AMCG00017230 mRNA upstream 439014 51214259 ~ 51214516 (+) True AMCG00017230
AMCG00017231 mRNA upstream 441139 51212179 ~ 51212391 (+) True AMCG00017231
AMCG00017229 mRNA upstream 477071 51169613 ~ 51176459 (+) True AMCG00017229
AMCG00017246 mRNA downstream 59858 51723699 ~ 51725528 (+) True AMCG00017246
AMCG00017248 mRNA downstream 93884 51757725 ~ 51827775 (+) True AMCG00017248
AMCG00017247 mRNA downstream 174742 51838583 ~ 51844854 (+) True AMCG00017247
AMCG00017252 mRNA downstream 284376 51948217 ~ 51985368 (+) True AMCG00017252
AMCG00017253 mRNA downstream 341379 52005220 ~ 52015155 (+) True AMCG00017253
TU23712 other upstream 1091742 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 1100545 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 1932059 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 2249896 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 6997432 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 1150412 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 1157220 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 1672068 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 1839591 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 2126706 53790547 ~ 53792694 (+) True G19829

Expression Profile