RNA id: AMCG00017240


Basic Information

Item Value
RNA id AMCG00017240
length 3629
RNA type mRNA
GC content 0.48
exon number 19
gene id AMCG00017240
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51496219 ~ 51525354 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGATCGCTGTTTTGCTCTCCTGGCAACAGCGCTCCAGCAGTGCGTCGAGCACAATCCAGtgtgtatttatattttttccaggtGGTTCTCCAACAGCATTGCAAATCAAGTGTGGCCCCATTGAGCCCAGTTCACCACTGCAAGACAAAGGGCAGCTGCACCTCCATCCTCCTGAGCCATGTCTCCAGAGATCAGGGAAACACCTCATCAACAATGCTGCGGCAGTGAAGAAGCCCCCCGCACAGAAACCTCAAGTGCCTCCTAAGCCCGGTCACCTGCAGCATCTCGGTCCAGAGAGGAAGCCCAAGGTCATCCCACCAGCTCCTTCCCGACCTCTCCCCGCCAACCCGCCGCCAAAGCCAAGCAAGAATTCGGTGCCAacagagaaggaggagaaggatcCAGGAAAAAGTGTGTGTCTGCTCATTGAGAAGTTTGAAAAGTCCAGaacACCTATCCTTGGAATCCATAGAAGAAGTCAATTACACCTCTATCTAAATATGGATACAACCCAGGAGTCGATGGAGCAGCTGGGCAAGGACTCCGAACCACAAGATTCAAGTGACTCTTCCACAGCGGATAAACTAGCACTTAGCGATTCTGAAAGGACACCGGACGTCACGGAGCTGTCGAATTTCAGCACGTTGCGAATTGGTGAGAAAAGCGAAATCAAAAACGCCGGGGACTGCTCCGCCGTCAGCCAGAAAGAGGACCCCGGCGAGCTCAATGACAATCAAGACTCTGCCTTGGAGCAAAACGGGAATGGCAAAATTCCCAACAGGGACAGTGGGATCGACAGCCCTTCGTGCACCGTGGAAGGAGAGGTGTTTCCACACGACGAAGCCATCGACGAGCAGAACGAGAGCATGGCTGAGGCTGACAAGGCGAGCTATGCTTCTTCCATGGACAATAAGAGAGACTCCTCTTCCACAGAGAATAAGAGAGACTCCACTCAGGATGAGGAGGACAGTGATATGGACGAGGGTAGCAGCGAGGAACAGGAAACGGCAGAAGTGacaaaaacagagcagacagaTGCATCTAAGTGCACGGAGCCTCAGAAATTGCTGAACATTGCCAGGGAACTCCTACAGACGGAGGAGGCCTATGTGAAGAGGTTACACCTACTGGACCAGGTATTTTGCACTAAATTAACAGAAGCTGGAATTCAGCAAGATGTCATCACTGGAATCTTCTCGAACATCTCCTCGATCTATTGCTTTCACGAGCAGTTTCTCCTCCCCGAGCTGAAGACCCGCATCATCAATGAGTGGGAGTCAAATCCTCGGATTGGAGACATCCTACAGAAGCTGGCTCCGTTCATGAAGATGTATGGAGAGTACGTGAAGAACTTCGATCGGGCAATGGACCTGGTCAACACATCGACACAGCGATCATCTCAGTTCAAGAGTACTGTTCAAAACATACAAaagcaggaAGTGTGTGGGAACCTAACCTTGCAACATCACATGCTTGAGCCGGTGCAGAGGATCCCACGGTATGAGCTGCTGCTCAAGGACTACCTGAAGAAACTGCCCGAGGACGCCCTGGACAGGAAGGATGCCGAGAAGGCTCTGGAACTCATCTCCACAGCCGCCAACCACTCAAATGCAGCTATTAGAAAAATGgAAAAGATGCACAAGCTGCTCGAAGTGTATGAAAGACTTGGAGGGGAAGAGGATATTGTAAACCCTGCCAATGAGCTGATCAAAGAGGGACATATCAAGAAAATGTCGGCCAAGAACGGGACTGCTCAGGACCGATATTTATACCTGTTCAACAACATGGTGCTATACTGTGTGCCAAAACTACGGCTAATAGGTCAGAAATTCAGCGTGCGAGAGAGGATCGACATCGCAGGCATGGAGgtgcAAGAGAGGGTGAAGCATAATTTGCCTCACACATTTGCAATCAGTGGGAAACAGAGATCGCTGGAGCTACAAGCCAGAACCGAGGAAGAGAAGACAGATTGGATTCAGGTTATTTTGGCCACGATTGAAAAGCATAAACAGAACAGCGAGACTTTCAACAAAGCCTTCAACAGCTCCTTCTCCAGAGATGAGGAGCACCCCCCCGAATCTCCCaatATACTGGGTAACTTGTCTATGGAATCCTTTGATGGCAGTCCCTCACCGGGTGGGCTGGATCCTTCCAAGAGCAAGTCATACAAAgcgaagaaggagaaggagaagcagATGTGCAAGGGATGCAATGAAACCTTCCACCCCATCACGAAACGGCGTCACCACTGCAAAGCGTGCGGAGCGGCAATCTGTGCAAAATGCTCCGAGACAAAGTTATGTGAAAACAAGACCAGTCGTGTGTGCCGGGAGTGCTTCGAAGGACAGGGGAGCACGGGCCCTGATGCCATCGGGGACCTGAGGAAGAAAACCACATTGGAGAAGCAGAATTCCCTAGTGCCAGAAAACACCCTCATCTGCAGCAGTCTGCATTTCCTGGAGAAGGGGAAGACCTGGAACAAAGTTTGGGTAGCCATTACCAAAAACGAACCGTTGGTGTTGTACCTGCAAGTGAGCAATCAGGAAAGTCGCTCGCCACGTGCCATCCCTCTGCCCGGCTATGAGGTCAGCCTGCCCACGGAGAAGCTGGACATGAAACACGCCTTCAGGCTCAGCCAATCGCAGCAGACCATCCTGTTCAGTGCCGAGGACGAGCAGATGCAGCTGAAATGGGTGGAGGTCCTGTTGAAAGCCGCCAAAGGGGAGACGGTGTCAGATGCAGAACTGAGAAACAGCCAATAGCTTTGCCACTACCAAGCTCCCCCGGGACTTCCTGTGgtgtcaaacacacacattacttgAATTCACTTTACcatggcactttttttttttttagaagatgTATCGGATATTTGTATCTACTTGTatctatgtttttattattgttctggTGTCTTcgagaaggaaagaaaagaaaaaatgagaagctggttgtttttttttattgtagcaTATAATATTCTGTTAACATTCCTTAAAGGGTGATccctccacccccacacacacaaagaatacATTGTGCATACATCTGGTGAAGCATTAACTCTCTTTGTGATTTGCTCATTCGTATTAAGTATTGTTTGTATCTCTCTCAGTCGTTTCAGTGGCTGTTTTGTGCCGATTGTACAGTATAGTATTTCATTAGCTGAAGAACGAAGCTGCCATTCAGATATAAGTGACGCGGAGAGGCGTGGAGGCTTGTGGCTGGCCACTGACCGTTCCCTTTTCATCCTGTCTTCTCACTGTATGATGCTACTTGTGAATTATAagatatataattaattgaCCTTTACTACTGCTAATTGGGGTATGTCTActgttttgtgatttaaaaaaaagcccaTAGCAACATAAAGTACTGTATGTGTTAAGGTTATGAAAATTCCTAAGGATactttagagagagagagagacttctaCATGCATgttaattcacatatttatgtACTGTGCTTCTAAATGAACTTGTTTAACTCTCATCGTAAAGACCCTTCTGTCTTGTAAGTGGAtgaatacagtattattatacGGCTAACTGGGACCATGCACATGGAGCAACACGCAAGCATATCATCAATAAAAACCGCCAACGTCTCATGGTTCAC

Function

GO: NA

KEGG:

id description
K05722 FGD3; FYVE, RhoGEF and PH domain containing 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 58126 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 199476 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 283846 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 330544 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 857448 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 1022383 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 1123654 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 1154599 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 1243548 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 1484524 53009878 ~ 53010218 (-) True G19663
AMCG00017239 mRNA downstream 20160 51463513 ~ 51476059 (-) True AMCG00017239
AMCG00017234 mRNA downstream 60980 51430687 ~ 51435239 (-) True AMCG00017234
AMCG00017236 mRNA downstream 84643 51365189 ~ 51411576 (-) True AMCG00017236
AMCG00017235 mRNA downstream 132998 51344359 ~ 51363221 (-) True AMCG00017235
AMCG00017233 mRNA downstream 168902 51298360 ~ 51327317 (-) True AMCG00017233
AMCG00017242 mRNA upstream 46002 51571356 ~ 51605585 (-) True AMCG00017242
AMCG00017244 mRNA upstream 98698 51624052 ~ 51627775 (-) True AMCG00017244
AMCG00017241 mRNA upstream 142194 51667548 ~ 51685160 (-) True AMCG00017241
AMCG00017245 mRNA upstream 167744 51693098 ~ 51712522 (-) True AMCG00017245
AMCG00017249 mRNA upstream 305498 51830852 ~ 51837789 (-) True AMCG00017249
TU23984 other downstream 46433 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 46433 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 61151 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 3001870 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 8631603 42808711 ~ 42864616 (-) True G17842
TU24132 other upstream 330892 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 1333236 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 1857986 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 1860742 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 1860742 53386096 ~ 53387709 (-) False G19730

Expression Profile