RNA id: AMCG00017241


Basic Information

Item Value
RNA id AMCG00017241
length 2458
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00017241
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51667548 ~ 51685160 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGTGTGTGTCTGCCTGGGACATTGCCATGCATTGggcacacactgtacacacacacacaccgcagGCATTGGGTTGTGCCAGTCAGAtctgcacacacgcacacatctcctctctctctctctctctctctctctctctttccccacaTCAGAAGGCTGACGTGCTTTGCAACTGTGCATCACATTCCTCTCCCTCCCATCTGCAATTCTTCCAGTCTGCCCAGTTGCTGCTCCTGACAGCTTCTCTCCATGGAGGATTACCACAAACCCGACCAGCAGACCCTGCAGGCGCTGAAGAACATCGCCAACCGGCTCCGGATCAACTCCATCAAGGCGACCACCGCGGCCGGGAGCGGCCACCCTACATCATGCTGCAGTGTGGCAGAGATTATGTCGGTGCTGTTCTTCCACACAATGAAGTACAGGCCTGAGGACCCAAGGAACCCCCACAATGACCGCTTTGTGCTCTCCAAGGGTCACGCAGCTCCAGTGCTTTACTCTGTGTGGGCGGAGGCGGGATACCTCAAGGAGAGCGAGCTGCTGAACCTAAGGAAGATCGACTCCATTCTGGAAGGACATCCTGTCCCAAAGCAGCAGTTTGTGGATGTCGCTACAGGATCCTTAGGCCAAGGGCTGGGCGCAGCTTGTGGCATGGCCTATACGGGCAAATACTTCGATAAAGCAAGCTACCGTGTGTTCTGCCTGCTGGGGGACGGGGAGCTGTCGGAGGGAGCCGTGTGGGAAGCCATGTCCTTTGCCGCTTACTACCAGCTGGACAATCTGGTGGCTATCCTGGACATTAACCGCCTGGGGCAAAGTGACCCTGCCCCCCTGCAGCACCATGTGGACAAGTACCAAAGACGCTGTGAAGCTTTCGGCTGGCATGCCATCGTGGTGGACGGGCACAGTGTGGAGGAGCTGTGCAAAGTGCTGTGCCAGGCCAAGCATCAGCCCACTGCCATTATTGCGAAAACAATGAAAGGGAAAGGAATTTCAGGAGTGGAGGACAAGATGGGCTGGCATGGGAAGCCGCTGACCAAAGACATGGCCGACACTGTGCTGAAGGAGCTGCACAGCCGCAtcctcaacaacaacaagcgGCTGTACCCGGCACTGCCCATCGACGATGCCCCGCCCGTCACCATCCGCAACATCCGGATGCCCAATCCTCCCAACTACAAGCCTGGGGAGAAGATTGCTACCAGGAAGGCGTACGGTGTGGCTCTGGCAAAGCTGGGCCGCTGTAGCGACCGTGTGATTGCTTTAGATGGTGACACCAAGAACTCCACCTTCTCTGAAATATTCAGGAATGAGCATCCCAACCGCTTCATCGAATGctacattgctgaacaaaacatgGTGAGTGTTGCCATCGGCTGTGCGACCCGGGACAGGACCGTGGCCTTTGCCAGCACTTTCGCCACCTTCTTCACTCGAGCCTACGACCAGATCCGCATGGCAGCTATCTCCGAGAGCAACATCAACCTGGTGGGCTCCCACTGTGGGGTCTCTATCGGTGAGGACGGGCCCTCGCAAATGGGCTTGGAAGACCTGGCCATGTTCAGGGCCATCCCCACAGCGACCATCTTTTACCCGAGTGACGGCGTCTCCACCGAGAAGGCGGTTGTGTATCAGAGCAAGGATGACCATGTGACCGTGATCGGCGCCGGAGTCACCCTGCACGAGGCTCTCGCGGCAGCCGAGCAGCTCAAGAAAGAGCGAATCAACATCCGGGTGATCGATCCCTTCACTATTAAACCTCTGGATGCAAAAACGATCATCGACAACGCCAAAGCGACCAGGGGCCGGATCATCACTGTGGAAGACCACTACTACGAAGGTGGTCTGGGGGAGGCTGTGACATCGGCGGTGGTGGGTGAGCCCGGGTTCATGGTGCACCGTCTGGCCGTGTCCCACGTCCCACGCAGCGGCAAGCCTGCGGAGCTGCTCAAGATCTTCGGCATCGACAAAGACGCCATCATGCAGGCGGTCAAGAAAATGATCAGCAACTCGGCCAATGCAAAGTAATCACACCAGAGCACGCCGATACTGTATCTCACTGACATTGACAGAAATCACTTCACAGCAGCTTCACAGGCCAACCGCTTCGATTAATAAACTGGTCGCTGAAATCCTGCAAGAATTGTACTTCTGTTCATTGTCATTTACCCCAGTTACAACACTCCCTTAAGTATCAGTAAAATGTTTGTCCCATGAGAATGCATAACGTGTTAGTATgaaacaggttaaaaaaaagtatgtgtcactctttttttttaaatattttaaataaatacacccttTCTGTACCCTTATACGGATGACCACATTAAATATTGCCACCGATTTACTGCAAACTTTAAGGTCATGTTCAGTATTGATTTAaagtattgcttttctttttacccTTAAAATGTTATCAccaaataaaagtaatgatttcttcacaaaaaaa

Function

GO: NA

KEGG:

id description
K00615 E2.2.1.1, tktA, tktB; transketolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 229455 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 370805 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 455175 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 501873 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 1028777 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 862577 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 963848 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 994793 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 1083742 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 1324718 53009878 ~ 53010218 (-) True G19663
AMCG00017244 mRNA downstream 39773 51624052 ~ 51627775 (-) True AMCG00017244
AMCG00017242 mRNA downstream 61963 51571356 ~ 51605585 (-) True AMCG00017242
AMCG00017240 mRNA downstream 142194 51496219 ~ 51525354 (-) True AMCG00017240
AMCG00017239 mRNA downstream 191489 51463513 ~ 51476059 (-) True AMCG00017239
AMCG00017234 mRNA downstream 232309 51430687 ~ 51435239 (-) True AMCG00017234
AMCG00017245 mRNA upstream 7938 51693098 ~ 51712522 (-) True AMCG00017245
AMCG00017249 mRNA upstream 145692 51830852 ~ 51837789 (-) True AMCG00017249
AMCG00017251 mRNA upstream 161436 51846596 ~ 51860267 (-) True AMCG00017251
AMCG00017250 mRNA upstream 178174 51863334 ~ 51865422 (-) True AMCG00017250
AMCG00017254 mRNA upstream 339123 52024283 ~ 52029687 (-) True AMCG00017254
TU23984 other downstream 217762 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 217762 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 232480 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 3173199 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 8802932 42808711 ~ 42864616 (-) True G17842
TU24132 other upstream 171086 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 1173430 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 1698180 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 1700936 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 1700936 53386096 ~ 53387709 (-) False G19730

Expression Profile