RNA id: AMCG00017243



Basic Information


Item Value
RNA id AMCG00017243
length 921
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00017243
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51639637 ~ 51640615 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCAGGTAAATGGGTCAAATACGGAAAGAAATATCGCAAAGAATGGGAGACAGAAAAGGGATTAATGGAATGGATTCGAAGTGTTCCAAGTGATGATACAAAAGAGTTCTGCAAATATTGCAAATGTGAAATCATGCTCACCACAGTGcataaaacaaattcaactgCTATCTCAAATGCCAGAACTTTATTTGACACAGGCAGTTCCTTTCTAAGAACTAATGTTGCAGTAAGAGGCAGAGCTGCAGCTGGCTGCTCATGTTGCTTTGCTGGCCACTCAAGCACCTTAACTGTTGATCATTTTGGAAGAGTTGTGGAAGACATTTCCAAGAAAGGTATCAGTTTACACAGAACGAATTGCACAGCTCTAATTAATTCGGTGATAGGACCAGTAGTGCATGAAGACCTTCTGGAGGATATAGGAAGTGGACCATATTCTTTTATTGTCGATGAAAGCACTGATGTAACAACCAGAAAACAACTATGCATAGTCATCAGATATTACAGCAAGAAGCTCTCACAAATCATTAGCACCTTTGCAGGAGTGATACATATAGTAGCTGGGGATTCACTGACCATAGAAAATGCTTTGTTCAAATTCCTGGACGACAACAAAATGTCCATGCTGAATTGCATCGGCCTTGCAACGGATGGCTGTAACACAATGTGTGAGCAACATAACTCAGTGCTACAGAAATTCCATGACTGCAATCCTCATATTGtctatataagtgtgtgtgccATTCGCTTCATCTCTGTGCATCAAAAGCTGTCAGTGTCCCGCCCAAAAATCTGGTTTTCAAACGCCACCCAGCATCTCCAAAAATATTCTGAACTGTACAAAATCATAAATGTAGGTGAAAGCCCTCTGAAGATTCTGCAGCTGTCAGACACTAGGTGGCtcgaagagaagagaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24023 lncRNA upstream 67643 51565289 ~ 51571994 (+) True G19366
TU23921 lncRNA upstream 299520 51339913 ~ 51340117 (+) True G19292
TU23904 lncRNA upstream 342919 51295832 ~ 51296718 (+) True G19275
TU23870 lncRNA upstream 500802 51137293 ~ 51138835 (+) True G19245
TU23810 lncRNA upstream 911486 50727740 ~ 50728151 (+) True G19195
TU24151 lncRNA downstream 466333 52106948 ~ 52116341 (+) True G19465
TU24211 lncRNA downstream 907134 52547749 ~ 52548031 (+) True G19515
TU24295 lncRNA downstream 1156317 52796932 ~ 52802211 (+) True G19588
TU24301 lncRNA downstream 1210316 52850931 ~ 52854722 (+) True G19591
TU24335 lncRNA downstream 1217538 52858153 ~ 52863723 (+) True G19617
AMCG00017230 mRNA upstream 425121 51214259 ~ 51214516 (+) True AMCG00017230
AMCG00017231 mRNA upstream 427246 51212179 ~ 51212391 (+) True AMCG00017231
AMCG00017229 mRNA upstream 463178 51169613 ~ 51176459 (+) True AMCG00017229
AMCG00017226 mRNA upstream 474389 51159919 ~ 51165248 (+) True AMCG00017226
AMCG00017227 mRNA upstream 571312 51048621 ~ 51068325 (+) True AMCG00017227
AMCG00017238 mRNA downstream 6789 51647404 ~ 51649518 (+) True AMCG00017238
AMCG00017237 mRNA downstream 12915 51653530 ~ 51663841 (+) True AMCG00017237
AMCG00017246 mRNA downstream 83084 51723699 ~ 51725528 (+) True AMCG00017246
AMCG00017248 mRNA downstream 117110 51757725 ~ 51827775 (+) True AMCG00017248
AMCG00017247 mRNA downstream 197968 51838583 ~ 51844854 (+) True AMCG00017247
TU23712 other upstream 1077849 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 1086652 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 1918166 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 2236003 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 6983539 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 1173638 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 1180446 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 1695294 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 1862817 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 2149932 53790547 ~ 53792694 (+) True G19829

Expression Profile