RNA id: AMCG00017244


Basic Information

Item Value
RNA id AMCG00017244
length 288
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00017244
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51624052 ~ 51627775 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCGTGGAGGAGCAGAAGGGCTTCCCCGGGATGGCGGAGTCGCTGCGGGGGGAGGTGGAGCGGCTGTCCCGGGAGCTGAGCGAGACGAGCCGGGAGAAGATCCAGGCGGCGGAGTACGGGCTGGCGGTGCTGGAGGAGAAGCAGCAGCTCAAGCAGCAGTACGACGAGCTGGAGGCCGAGTACGAGGTCGTGCGGCAGGAGCTGGACCAGCTGAAGGAGATGTTTGAAGTCTGTCCCCTGTCCCCCACGTGTGGCAGCACAGCTCACATCAGTCTTAACTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 185959 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 327309 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 411679 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 458377 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 985281 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 919962 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 1021233 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 1052178 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 1141127 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 1382103 53009878 ~ 53010218 (-) True G19663
AMCG00017242 mRNA downstream 18467 51571356 ~ 51605585 (-) True AMCG00017242
AMCG00017240 mRNA downstream 98698 51496219 ~ 51525354 (-) True AMCG00017240
AMCG00017239 mRNA downstream 147993 51463513 ~ 51476059 (-) True AMCG00017239
AMCG00017234 mRNA downstream 188813 51430687 ~ 51435239 (-) True AMCG00017234
AMCG00017236 mRNA downstream 212476 51365189 ~ 51411576 (-) True AMCG00017236
AMCG00017241 mRNA upstream 39773 51667548 ~ 51685160 (-) True AMCG00017241
AMCG00017245 mRNA upstream 65323 51693098 ~ 51712522 (-) True AMCG00017245
AMCG00017249 mRNA upstream 203077 51830852 ~ 51837789 (-) True AMCG00017249
AMCG00017251 mRNA upstream 218821 51846596 ~ 51860267 (-) True AMCG00017251
AMCG00017250 mRNA upstream 235559 51863334 ~ 51865422 (-) True AMCG00017250
TU23984 other downstream 174266 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 174266 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 188984 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 3129703 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 8759436 42808711 ~ 42864616 (-) True G17842
TU24132 other upstream 228471 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 1230815 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 1755565 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 1758321 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 1758321 53386096 ~ 53387709 (-) False G19730

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007050 True 3204 mRNA 0.50 9 NC_007122.7 37049347 ~ 37088934 (+)
grasscarp (Ctenopharyngodon idella) TU241817 True 1476 TUCP 0.58 6 CI01000050 235551 ~ 253062 (-)
mexican tetra (Astyanax mexicanus) TU241817 True 1011 lncRNA 0.48 5 NC_035916.1 22950963 ~ 22957159 (+)