RNA id: AMCG00017247


Basic Information

Item Value
RNA id AMCG00017247
length 1491
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00017247
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51838583 ~ 51844854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGTGCGGGGCGGTGCGGGGCGGTGCGGGGGCGGCGGGCCGCTGTGTATAAACCCGCAGCCGGACCCGCAGTCTGCGCACAGCAGCGCAATGCGGCGCCTCCTGCTCCTGTGTGCGCTGGGCTGCGCGGCGGCTCTGCAGCAGGTGACGGCCCCCCAGATGAATGGACTGTGGAGCATGAGTTCACCCCCTCGTCTCCGGGGTCCCTAAGTGTTACTCTGGCTGAGACCGGACACACGCCGCCCTCCGAAGGGCCCCTGCTAAATATCAGCTGGTCCCTTAATGTGGACGGAAGCCTTCCATATCTTAATGCTACTATCATCGAAATTGACGGGTATAACAGGAAACAGTTTCGATGTAATTATAAACATCCATTTAATGAAAAGATTAATTACACTCATCAAAATAAgATGTGGTTCCACTTCAGTGGATTTACTGCTACACCTGGCAAATTGTATTCTGTAAGCGCTCTCAACATCCCACCGCCAAACATCGGAGGAGATTATGACAGTGAGCCAGAACAGTTCAACACACCAGATTGCACCGACGAGAGAATGAGGCTCTATGAATATTGCGTTGCAATGGCACCTTCATATAACGCTGGTGTTCTCATTGCCATGACTGTTGCTGGGATTTCACTCTGCGGCATCTTCATTTTGTataAGATCAGCTGGTGTGGTAGAAACACTggcacaagcacacaaacacccTTCACAGTCCTTATAGTTTATCCTCCAGGAAGCAGCGTTTTGCAGAAGACGGTGTTGATTTTTGCCGAATTCCTCCAATCGCACAGCAGATGCAAAGTCATTATAGACATCTGGCAGAGACAGAGGATCGCAGAGATCGGACCGGTCCGGTGGCTGGCCATACAGAAGGAAAGCGCTGACAAGATCATTGCCGTTTGTTCAGACAGCACCTCCAGGCAGTGGCCCGGCAGCAGTCTGGAGGTCCGGGACCAGACCGTTCCTGCCTCTACCGAAGACTTCTTCATCCTGGCGCTCAACATGTTCAGCAGTGACCTGAGACAAGATCTCTGCAAGTACATGGTTGTGTATTTTGGCGAGATTGCCAAAGGGAAGAGTCGCCATGTGGCTCTCAGGGCATGCAGGTCCTACTCTCTCATGAAAGACATTGAGAAGTTTTACCACAGTCTCCACAACATACCCCCGAACAATTCCTGTTGTATACGCCCAGCGTCTTCAATGGGGCCCACTTACACAACCGACACGAGCAAGAAACTGAGAGAAGCAATACGCGAGTTAAAGGAGTGGGAGGAGCTTCAGTTGAGCTCCACAACGCAAGATCTCCGCTGACGGGCATCTGCACTGGTGTTTAGAAAACTGTTGTAAGTCGAGACATTATTTACCAGATGCGCCGTGTTATAAATGACTGTTACATTCCTGGAAACTCATATCTTAAATATACCAAAATTGATTATGGAAATGgaggaaaactaaataaaagagTACTACATGCCTTtacaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24023 lncRNA upstream 266589 51565289 ~ 51571994 (+) True G19366
TU23921 lncRNA upstream 498466 51339913 ~ 51340117 (+) True G19292
TU23904 lncRNA upstream 541865 51295832 ~ 51296718 (+) True G19275
TU23870 lncRNA upstream 699748 51137293 ~ 51138835 (+) True G19245
TU23810 lncRNA upstream 1110432 50727740 ~ 50728151 (+) True G19195
TU24151 lncRNA downstream 262094 52106948 ~ 52116341 (+) True G19465
TU24211 lncRNA downstream 702895 52547749 ~ 52548031 (+) True G19515
TU24295 lncRNA downstream 952078 52796932 ~ 52802211 (+) True G19588
TU24301 lncRNA downstream 1006077 52850931 ~ 52854722 (+) True G19591
TU24335 lncRNA downstream 1013299 52858153 ~ 52863723 (+) True G19617
AMCG00017248 mRNA upstream 10808 51757725 ~ 51827775 (+) True AMCG00017248
AMCG00017246 mRNA upstream 113055 51723699 ~ 51725528 (+) True AMCG00017246
AMCG00017237 mRNA upstream 174742 51653530 ~ 51663841 (+) True AMCG00017237
AMCG00017238 mRNA upstream 189065 51647404 ~ 51649518 (+) True AMCG00017238
AMCG00017243 mRNA upstream 197968 51639637 ~ 51640615 (+) True AMCG00017243
AMCG00017252 mRNA downstream 103363 51948217 ~ 51985368 (+) True AMCG00017252
AMCG00017253 mRNA downstream 160366 52005220 ~ 52015155 (+) True AMCG00017253
AMCG00017267 mRNA downstream 539166 52384020 ~ 52413911 (+) True AMCG00017267
AMCG00017275 mRNA downstream 896309 52741163 ~ 52743891 (+) True AMCG00017275
AMCG00017279 mRNA downstream 912609 52757463 ~ 52760504 (+) True AMCG00017279
TU23712 other upstream 1276795 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 1285598 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 2117112 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 2434949 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 7182485 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 969399 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 976207 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 1491055 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 1658578 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 1945693 53790547 ~ 53792694 (+) True G19829

Expression Profile