RNA id: AMCG00017248


Basic Information

Item Value
RNA id AMCG00017248
length 5970
RNA type mRNA
GC content 0.51
exon number 45
gene id AMCG00017248
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51757725 ~ 51827775 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtcacaCGACTACGACTGGGCCCAAGTGGAAGTCTGTAGCAAGAAGAAGAGTCTCTGGAGCCACACCGTGAATCGGCACTTTCAGACCAAGCCGAGAGCTGTGGAGCTCCTGTGGCATCGAATGAAAGACGAGACAGATGTCCTTACCGATTTCAAATCAGCCAAGCTGTACATTCGCACCCCGGCCATTGTCCTGCATCCCCACTGGTTCTGTGAAACAGTAGAATATGCCTTCCTTATAATTTTTacaattgaaacatttttgaaGATTATAGCATATGGATTAGTAATGCACCAGAATGCTTATGTAAGAAACGGATGGAACATGTTGGATTTTGTAATCGTAGTAGTAGGGTTATTTAGTGTTGTCTTGGAACTATTAACCAAAGAGGGAGATGCAGGGGCCCACCAGTCAGGTGGGAAGCCGGGTGGCTTCGACGTCAAAGCCCTGAGAGCCTTCCGTGTGTTGCGCCCCCTCCGACTCGTATCAGGAGTGCCCATCTTGAATTCCATAATTAAAGCCATGGTCCCTCTTCTCCACATCGCACTGTTGGTTTTATTCGTGATCATAATCTATGCCATTATAGGATTGGAGCTCTTTATTGGAAAAATGCACACAACCTGTTACTTCGCTGGCACAGaTATATTAGGAGAAGAAGACCCAGCACCGTGTGCAATCTCAGGGCATGGGCGCCAATGTCCCATCAATGGTACTGTATGCAAAGAAGGCTGGCATGGCCCGAACGGAGGCATCACCAATTTTGACAACTTTGCCTTTGCCATGTTAACTGTGTTTCAGTGCATCACAATGGAGGGGTGGACCGATGTATTGTACTGGATGAATGACGCCATGGGATTTGAGTTACCATGGGTATATTTTGTCAGTCTCGTCATCTTCGGATCCTTTTTCGTTCTAAACCTTGTTCTGGGTGTGTTGAGCGGAGAGTTctccaaagagagagagaaggcaaaGGCCAGGGGGGACTTTCAGAAGCTGCGCGAGAAGCAGCAGCTCGAGGAGGACCTGAAGGGCTACCTGGACTGGATCACCCAGGCCGAGGACATTGACCCAGAGAATGAGGAGGAGGGGGACGAGGAAGGCAAACGCAACCCAAGCATGCCGACGAGTGAAACGGAGTCTGTAAACACCGAGAACGTGAACGGTGAGGACGAGAAGGCCCCGTGTTGTGGCGCTCTGTGTCAAAAAATTTCAAAGTCAAAATTCAGTCGGCGCTGGCGTCGCTGGAATCGGTTTTGCCGCAGGAAATGCCGAGCTGCGGTGAAATCTGTCTCGTTCTATTGGCTCGTCATTATTCTAGTCTTTCTCAACACACTCACCATCTCCTCTGAGCATTACAACCAGCCCAACTGGCTCACTCAAGTCCAAGaCATTGCAAACAAAGTTCTCCTCACCCTGTTCACCTGTGAGATGTTGGTGAAAATGTACAGCCTGGGTCTGCAGGCCTACTTCGTCTCCCTCTTCAACCGGTTCGACTGCTTTGTGGTGTGTGGTGGGATCGTGGAAACCATTTTGGTCGAGCTTGAAATCATGTCCCCTCTGGGAATCTCTGTGTTTCGATGTGTCCGTCTCTTAAGGATCTTCAAAGTGACACGTAATTTAGTGGCCTCGCTGCTCAACTCCATGAAGTCCATTGCCTCCCTGCTgctcctgctcttcctcttcatcatcatcttctcCCTACTGGGGATGCAGCTCTTCGGGGGCAAATTCAACTTcgacgaaacacaaaccaaacggAGCACTTTCGATAACTTTCCCCAATCTCTGCTCACAGTATTCCAGATTTTAACAGGTGAAGACTGGAATGCTGTCATGTATGACGGGATAATGGCGTATGGCGGCCCATCGTCCTCAGGAATGATAGTCTGCATATACTTCATTATCTTATTTATCTGTGACATCCTCCTGAATGTCTTCTTGGCTATCGCGGTAGACAATTTGGCGGATGCGGAGAGTTTGAATACGGCCCAGCAAGAAGAAGCagaggaaaaggaaaggaagaaaagtGCCAGGAGTGGGAGCTCGGAcaagaaggaggaagagaaaactGATACCAAGGCATCGGAAGCCAAGGTGCCAGTGGAGGACGCAGAAGAGGAAGATAAGGACCCGTACCCTGCAGGTGATGCTCCTGGGGAAGATGAAGACGAGGAGCCCGAGGTCCCAGCCGGGCCACGGCCCCAGAGGATCTCCGAACTCAACATGAAGGAGAAGATCACACCCATCCCGGAGGGCAGCTCCTTCTTCATCTTCAGCAGCACCAACCCGATTCGGGTGGGATGTCATCGGCTTATTAATCACCACATCTTCACAAACCTCATCCTAGTCTTCATCATGTTGAGTAGTGTTTCTCTGGCTGCAGAGGACCCCATCCGCAACTTCTCTGCTCGAAATATTATACTTGGTTACTTTGACTATGCTTTCACGGCAATCTTTACTGTTGAAATCCTGTTGAAGGTCCTAGGCTATGCAGATTATGTCTTCACTagtatgtttacatttgagATCGTGTTGAAGATGACGGCTTTTGGGGCATTCCTGCACAAGGGGGCTTTTTGTCGAAATTATTTCAACTTGTTGGACTTGCTGGTTGTGGGAGTTTCTCTGGTCTCTTTTGGCATTCAGTCTTCGGCCATCTCCGTTGTGAAGATTTTGAGAGTGTTACGTGTCCTCAGGCCGCTGAGAGCCATCAACAGAGCAAAAGGCCTCAAGCACGTGGTCCAGTGTGTGTTCGTTGCCATCAGGACCATTGGTAACATTATGATTGTCACCACATTGCTGCAGTTCATGTTCGCTTGCATAGGAGTGCAGCTTTTCAAgGGAAAATTCTACCGCTGCACAGACGAGGCCAAATCCAGTCCGGGGGAATGCAAGGGGACCTACATTCTGTACAAAGATGGAGACGTGAACCACCCCATGATCCGCGAGAGGAGCTGGCAGAACAGCGAATTCAACTTTGACAACGTCCTGACAGCCATGATGGCGCTGTTCACGGTGTCCACCTTCGAGGGCTGGCCAGCGCTGCTGTACAAAGCCATCGACTCGAACGGGGAGAACGTGGGGCCGATTTACAACTACCGTGTGGAGATCTCCATCTTCTTCATCAtctacatcatcatcatcgccTTCTTCATGATGAACATCTTCGTGGGTTTCGTCATCGTCACCTTCCAGGAGCAGGGAGAGAAGGAGTACAAGAACTGCGAGCTGGACAAGAACCAGCGCCAGTGTGTGGAGTACGCCCTGAAGGCCCGGCCCCTGCGCAGATACATCCCCAAAAACCCCTACCAGTATAAGTTCTGGTATGTGGTGAACTCCACGGGCTTCGAGTACATCATGTTTGTGCTCATCATCCTCAACACGCTGTGCTTGGCAATGCAGCATTATGGGCAGTCTCCCCTCTTCAACTACGCCATGGATATCCTCAACATGGTCTTCACAGGTGTCTTCACTGTGGAAATGGTTTTGAAATTAATAGCCTTCAAACCAAGGGGTTATTTTGGGGACGCCTGGAACGTTTTTGACGCCCTCGTCGTTATTGGCAGCATAGTAGACATCGTTCTCAGTGAAATCGATAACACGGAGGACAGCTCGCGCATCTCCATCACCTTCTTCAGACTGTTCCGTGTGATGCGATTGGTCAAGCTCTTGAGCAGGGGGGAGGGCATCAGGACGCTCCTGTGGACATTCATCAAGTCTTTCCAGGCTTTGCCGTATGTTGCCCTTCTGATCGCCATGTTGTTTTTCATCTACGCTGTAATTGGGATGCAGGTAATTGAAGCTGGAAAGAaagtattcattcattcatttataacACAAAAACCTAAAGCACAGGACTTCAAATACAGCGAGGCATGGCAGGAGATCATGTTGGCGTGCCTGCCCGGCAAACGCTGTGACCCTGAATCTGACTATAACCCAGGAGAAGAGTACACGTGTGGGAGCAACTTTGCCATCAtctatttcattactttttacatGTTGTGCGCCTTCTTGATCATTAACTTGTTTGTTGCCGTCATCATGGACAACTTTGACTATCTGACGCGCGATTGGTCGATTCTTGGTCCTCACCATCTGGATGAATTTAAGAGAATATGGTCAGAATATGATCCAGAAGCAAAGGGCAGGATAAAACATCTGGATGTAGTGACCCTGCTACGTCGCATTCAGCCACCCCTGGGCTTTGGCAAACTGTGTCCACACCGAGTGGCATGCAAGAGATTGGTTGCCATGAACATGCCTTTGAACAGCGATGGGACGGTCATGTTCAATGCCACGCTCTTTGCCTTGGTCCGCACGGCTCTGAAGATAAAAACTGAAGGGAACCTAGAACAAGCCAACGAGGAGCTACGAGCCGTCATCAAGAAAATCTGGAAGAGGACCAGCATGAAGCTGCTGGACCAAGTCGTACCACCTGCTGGCGATGATGAGGTAACCGTGGGGAAGTTCTATGCCACCTTCCTGATACAGGACTACTTTAGGAAATTCAAGAAACGCAAAGAGCAAGGCCTGGTGGGGAAGCATCCGTCGAAGAACACCACCATCGCCCTGCAGGCCGGTCTCCGAACACTACATGATATTGGGCCCGAAATTCGACGAGCGATATCATGTGACCTGCAAGATGAGGAGGTTGTAGAGGTTAATCCTGACGAGGACGAGGATATTTATAGGAGGAACGGTGGCTTGTTTGGCAACCATGTCAATCACGTCAACGGTGACCGCCGGAGCTCCATGCAGCAGACAAACGCCACGCAGCGCCCCCTGCAGATCCAGACACCCGCCAGCCACCCCCCCGTGGACCATGAGAAATACAGCCGGACGGGGAACTCCCTGTCTCACAACCACTACAACCACAACTCCTACTCCAAGTCCCCCAAATCCACCAATGCCAATCTCAACAATGCCAATGTTTCGTCGATCCCCAACGGGAAGCACCCCGGCCATCGGTACTACGAGCACGCCTCTGCTAATGGGTACCCTTCCCATGCCTCCTACTTCAAGACTGACCTGTACGAGAAGCACAGGAAATCCAGCGTCAAAAGGTCCGACTCAGGGGACGGGCGTCTCCCCACCATTCGGAGAGAAGATCCCTCAGGGAGCGACTACTGCGAGGAGGACCGATACTCGGGGGAGTATTACAGCGGAGAGGAGTTCTACGAGGAGGACAGCATGCTCTCCGGAGATAGGAATATCACGAGCGATATCACAACAGTGATCTTGACTATGAGACGCCTAAAGGCTACCACCACCCCTACTACTACGACGATGACGAACAGCCGATCTATCATGAGTCACGCAGGTCTCCGAGGAGGCGTTTGCTTCCTCCGACACCCCAGGGTCATGGCTGTGGCTGGTCTGGATTCTAACCGAGCACAGAGACTCTCACCCACACGCTCCACGCGCTCCTGGGCCACGCCCCCGGCCACGCCCACCAGCAAGGACCGCTCTCCCTACTACACGCCCCTGATCCGGGTGGACCGAGCCACCAGAGACCACCACCTCAACAGCAGCCATTCGTCGGTGCACAAGAGCTCCTGGTACACGGACGACCCCGATTACCCCCACAGGACGTACACACCAGCAAACTTAAAGGTCCCTGCTGAGTTTCGACACAAGTACCACGAGAAGAGAGGGAGTGCGACCAGCTTGGTGTTGATATCGGAGGGACTGGGAAGATACGCGAAAGACCCAAAGTTTGTCTCGGCCACGAAGCACGAGATCGCAGACGCTTGTGACATGACCATAGACGAGATGGAGAGCGCTGCCAGCAACCTGCTCAACGGCAACGTGAAGAACGGAGCCAATGGGGAGATGTTCCCCATCCTTAGCAGGAGGGACTATGAGCTGCAAGACTTTGCCACTGGCTACAGTGATGAGGAACCGGACTCGGGGAAGTACGAGGAGGATTTAGCGGATGAAATGATATGCATTACAACTTTATAG

Function

GO: NA

KEGG:

id description
K04851 CACNA1D, CAV1.3; voltage-dependent calcium channel L type alpha-1D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24023 lncRNA upstream 185731 51565289 ~ 51571994 (+) True G19366
TU23921 lncRNA upstream 417608 51339913 ~ 51340117 (+) True G19292
TU23904 lncRNA upstream 461007 51295832 ~ 51296718 (+) True G19275
TU23870 lncRNA upstream 618890 51137293 ~ 51138835 (+) True G19245
TU23810 lncRNA upstream 1029574 50727740 ~ 50728151 (+) True G19195
TU24151 lncRNA downstream 279173 52106948 ~ 52116341 (+) True G19465
TU24211 lncRNA downstream 719974 52547749 ~ 52548031 (+) True G19515
TU24295 lncRNA downstream 969157 52796932 ~ 52802211 (+) True G19588
TU24301 lncRNA downstream 1023156 52850931 ~ 52854722 (+) True G19591
TU24335 lncRNA downstream 1030378 52858153 ~ 52863723 (+) True G19617
AMCG00017246 mRNA upstream 32197 51723699 ~ 51725528 (+) True AMCG00017246
AMCG00017237 mRNA upstream 93884 51653530 ~ 51663841 (+) True AMCG00017237
AMCG00017238 mRNA upstream 108207 51647404 ~ 51649518 (+) True AMCG00017238
AMCG00017243 mRNA upstream 117110 51639637 ~ 51640615 (+) True AMCG00017243
AMCG00017230 mRNA upstream 543209 51214259 ~ 51214516 (+) True AMCG00017230
AMCG00017247 mRNA downstream 10808 51838583 ~ 51844854 (+) True AMCG00017247
AMCG00017252 mRNA downstream 120442 51948217 ~ 51985368 (+) True AMCG00017252
AMCG00017253 mRNA downstream 177445 52005220 ~ 52015155 (+) True AMCG00017253
AMCG00017267 mRNA downstream 556245 52384020 ~ 52413911 (+) True AMCG00017267
AMCG00017275 mRNA downstream 913388 52741163 ~ 52743891 (+) True AMCG00017275
TU23712 other upstream 1195937 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 1204740 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 2036254 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 2354091 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 7101627 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 986478 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 993286 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 1508134 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 1675657 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 1962772 53790547 ~ 53792694 (+) True G19829

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008166 False 6421 mRNA 0.51 47 NC_007122.7 36793473 ~ 36957127 (-)
grasscarp (Ctenopharyngodon idella) CI01000306_09381571_09461159.mRNA True 6348 mRNA 0.46 47 CI01000306 9381187 ~ 9461573 (-)