RNA id: AMCG00017258


Basic Information

Item Value
RNA id AMCG00017258
length 1479
RNA type mRNA
GC content 0.55
exon number 13
gene id AMCG00017258
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52258966 ~ 52269557 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAACCATCCCGCCGTGCCTACGGGCTCGGCAGCAGTGGCCCTCCCAGCGATCCCAGTTTATTCTCGTCCGCGCTGTATTTTCAGATGCGGCGAGAAACCTCAAGGAAGAGAATGAAACGAAAAGCCGAGCCCGTCGACAGTTTGCAAGTTAGAAGAGGAAGAAATATGTCTGTCTGCAACATCCAATCTGTGATGAATAATGTCGAGGCTGGGTTTGCGTACATAATCGGGGTGTTGTGCGTCTCCGCCCGAATCACGAGCATCGCCCTGGTCTCTGCTGAGAGGAAAGCCCCTCTCCTCTCTGAGCGGCCCTGTTTTCTGCGTTCAGTGGCGTTTTCTCCGAGCCCGAACTTTCCCAAGATTGAGAATCTCCAAGAACAGCTTCGCGACAAAGACAAGCAGCTGACGAACCTGAAGGACAGAGTGAAGTCACTGCAGACCGACTCCAGCAACACAGACACGGCGCTGGCCACGCTCGAGGAGGCCCTGTCAGAGAAGCTGAACGACTCCAGCATTGAACTGGAGGGAGGCTGGGGAAGGGTGGGGGGGCCGGCGCGGGTGCCTGGGGGAGCCGCATCTCCAGAGCTGAGGGGCCCCTGCAAGCAGTCTGTTTGGACTGAAGTCTGCAGCGCTCTTGTGAAGTTTTCATCTCACGTGCACAGTGTCACGGCTGTGGCCTTCAGTGGAATTTCCGCTCTTCGCAAAAGGGATCCGGGATCAACGAAACCAGTGAGAGCGTCCGTTGAGATCTCGGGAATGAGTGGCTCTGACGTGCGGTCGGTCCGCGCCGTGAACACTTACAGACATTGTTTCAGGCATGAGCGAATCATCGAACGCCTGAAGGAGCAGCGGGAGCGAGACGACCAAGAGAGGCTGGAGGAGGTCGAGTCCTACAAGAAGGAAAACAAGGACCTGAAGGAGAAGGTCAATGCTCTGCAGGCCGAACTGACTGAGAAGGAGACCCACATATTCCCCCCCAAAACGTCGAGCGCTCACACTGTGCCATCGAGGGACCGCGGAGAACCGCATCGAATCAGTGGCAGCCTCTTCATCAAGTGTCTGTTAATATATGACTCTGATGATAACCCCTTCTGTCCCTCTTTCTTCCCGTCTCACCCTGTCCAGTGGCGTCCATTGCAATCTagtttaattgacttgaaaGAGCACGCGTCGTCGTTAGCTTCGTCGGGCCTGAAAAAGGACTCCAAACTCAAAACCCTGGAGATTGCCATAGAGCAAAAGAAGGACGAGTGTAGCGCCGTTCTTAGCAAAGTGAAGTTTGACACACTTTTAAAGGTGCTGGGCTCCTTCCTGGGAGTGTGCCAGCCCAGGACACAAGGTCTATCAGAAGGAAAGATTGTGCTATTTGGAGAACACCACCaatCCGTAATACATTCACAGTCGTCGGTCTACGCTGGGAAGCGCACAGCCTCCGGATTACTGGTCTCCCTGGCACAACTCCTGGCCAAACCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 820873 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 962223 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 1046593 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 1093291 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 1620195 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 278180 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 379451 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 410396 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 499345 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 740321 53009878 ~ 53010218 (-) True G19663
AMCG00017259 mRNA downstream 1964 52247004 ~ 52257002 (-) True AMCG00017259
AMCG00017260 mRNA downstream 40861 52212817 ~ 52218105 (-) True AMCG00017260
AMCG00017257 mRNA downstream 81384 52173862 ~ 52177582 (-) True AMCG00017257
AMCG00017256 mRNA downstream 118817 52128131 ~ 52140149 (-) True AMCG00017256
AMCG00017255 mRNA downstream 154876 52092427 ~ 52104090 (-) True AMCG00017255
AMCG00017264 mRNA upstream 15512 52285069 ~ 52290184 (-) True AMCG00017264
AMCG00017261 mRNA upstream 35199 52304756 ~ 52316156 (-) True AMCG00017261
AMCG00017263 mRNA upstream 63077 52332634 ~ 52335812 (-) True AMCG00017263
AMCG00017262 mRNA upstream 95267 52364824 ~ 52374860 (-) True AMCG00017262
AMCG00017268 mRNA upstream 123249 52392806 ~ 52403791 (-) True AMCG00017268
TU24132 other downstream 398824 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 809180 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 809180 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 823898 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 3764617 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 589033 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 1113783 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 1116539 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 1116539 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 1116539 53386096 ~ 53387709 (-) False G19730

Expression Profile