RNA id: AMCG00017260


Basic Information

Item Value
RNA id AMCG00017260
length 600
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00017260
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52212817 ~ 52218105 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAACGCCCCTAAACCCAGCCCTCCGCCCGGCAGCGCCCCTCTTCACCCCAGACCCCCCGCCCCCAGGGGAGCTGGACGGGCACAGCTGCATCCCACCCCCATCTGCCAGTGAGCGTGCGTCCGTCCCAGGGGGTGGGATTGTTGGGCAGCTGCCTCCGCTCGGGGGTCCCGGGGATGATGGGTGCATTGCTAATACATATTGTGGTTCCACTTTGCAGCTGGAGGAGCTGATGAACGCCCTGGAAAAAACTAGACAGGAGTTGGACGCCACGAAACAGCGCCTGTCCTCGACACAGCAGTCCCTGGCGGAGAAGGACGGACATCTGACCAACCTGCGGTTAGAGCGCCGGAAGCAGCTGGAGGAGATCCTGGAGATGAAGTCCTGCTCCGATCCCAGACAGGTCACATTGAACCTCTACCTGTGTGAGTCAGGTGATGTGTTTGATCTTTATTTTCCCGCCGTGGCAGCAGTTGGGATTGAAATCATCACGGCATCTGCACATCCGCAGCCGTCGCGTTTGAATCTGAATTCACGCTTGACAGAATGGCCGTCTAAGTACCTCGAAAACATCGGCCTGACTTCCTtcgaaaaataa

Function

GO:

id name namespace
GO:0006811 ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 774724 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 916074 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 1000444 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 1047142 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 1574046 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 329632 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 430903 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 461848 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 550797 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 791773 53009878 ~ 53010218 (-) True G19663
AMCG00017257 mRNA downstream 35235 52173862 ~ 52177582 (-) True AMCG00017257
AMCG00017256 mRNA downstream 72668 52128131 ~ 52140149 (-) True AMCG00017256
AMCG00017255 mRNA downstream 108727 52092427 ~ 52104090 (-) True AMCG00017255
AMCG00017254 mRNA downstream 183130 52024283 ~ 52029687 (-) True AMCG00017254
AMCG00017250 mRNA downstream 347395 51863334 ~ 51865422 (-) True AMCG00017250
AMCG00017259 mRNA upstream 28899 52247004 ~ 52257002 (-) True AMCG00017259
AMCG00017258 mRNA upstream 40861 52258966 ~ 52269557 (-) True AMCG00017258
AMCG00017264 mRNA upstream 66964 52285069 ~ 52290184 (-) True AMCG00017264
AMCG00017261 mRNA upstream 86651 52304756 ~ 52316156 (-) True AMCG00017261
AMCG00017263 mRNA upstream 114529 52332634 ~ 52335812 (-) True AMCG00017263
TU24132 other downstream 352675 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 763031 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 763031 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 777749 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 3718468 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 640485 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 1165235 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 1167991 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 1167991 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 1167991 53386096 ~ 53387709 (-) False G19730

Expression Profile