RNA id: AMCG00017261


Basic Information

Item Value
RNA id AMCG00017261
length 618
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00017261
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52304756 ~ 52316156 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTCGCCAAGCTTATTTTTATCGGGTTCCTCCACAGGAGCTGCACAGACGGAATCAACTCCAGCAGGAACCGGCGAAGACCAAGGCCCTGCAGACCGTCATCGAGATGAAGGACACCAAAATTGCTTCGCTTGAGAGGAATATAAGGGACCTGGAGGACGAAATCCAGATGCTGAAGACCAACGGCTTACTGAACACAGAGGACCGAGAGGAAGAGATGAAACAGATGGAGGTCTACAAGAGCCACTCAAAATTCATGAAGAATAAGaaaaaagaaatctccATCCGACAAAAAAAGCAAGCGAGCCGCACCACACGGACCGATGTCGTGCAAAAGCAGACGCACGACAACAACGAGGGGTGTGTGTCCGTTgataaCTTTGCGCCACAATTTTGTCTCGGGTCTGCGAGGGCTACTATCGACCAGTTGAAACAGGAACTGTCCAAAAAGGAATCCGAACTCCTTGCCTTACAAACCAAGCTTGAGACGCTGAACAATCAAAACTCAGACTGCAAACAACACATCGAGGTGCTCAAAGAGTCTCTTACTGCCAAAGAACAGCGCGCTGCCATTCTCCAGACCGAGTGGAGACCCGTTTCATCCCCCAGCGCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 866663 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 1008013 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 1092383 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 1139081 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 1665985 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 231581 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 332852 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 363797 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 452746 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 693722 53009878 ~ 53010218 (-) True G19663
AMCG00017264 mRNA downstream 14572 52285069 ~ 52290184 (-) True AMCG00017264
AMCG00017258 mRNA downstream 35199 52258966 ~ 52269557 (-) True AMCG00017258
AMCG00017259 mRNA downstream 47754 52247004 ~ 52257002 (-) True AMCG00017259
AMCG00017260 mRNA downstream 86651 52212817 ~ 52218105 (-) True AMCG00017260
AMCG00017257 mRNA downstream 127174 52173862 ~ 52177582 (-) True AMCG00017257
AMCG00017263 mRNA upstream 16478 52332634 ~ 52335812 (-) True AMCG00017263
AMCG00017262 mRNA upstream 48668 52364824 ~ 52374860 (-) True AMCG00017262
AMCG00017268 mRNA upstream 76650 52392806 ~ 52403791 (-) True AMCG00017268
AMCG00017266 mRNA upstream 100004 52416160 ~ 52428053 (-) True AMCG00017266
AMCG00017265 mRNA upstream 133960 52450116 ~ 52474341 (-) True AMCG00017265
TU24132 other downstream 444614 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 854970 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 854970 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 869688 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 3810407 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 542434 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 1067184 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 1069940 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 1069940 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 1069940 53386096 ~ 53387709 (-) False G19730

Expression Profile