RNA id: AMCG00017263


Basic Information

Item Value
RNA id AMCG00017263
length 603
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00017263
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52332634 ~ 52335812 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCATCCAGGCCCTGCAGGATGAGCTGAGGACCCAGAGGGACCTCAACCACCTCCTGCAGCAGGAGAGCGGCAACCGCTCGGCCGAGCACTTCACCATCGAGTTGACGGAAGAGAACTTCCGGCGGCTGCAGGCGGAGCATGACCGCCAGGCCAAGGAGCTCTTCCTCCTGAGGAAGACCCTGGAGGAGATGGAGCTGCGCATTGAGACCCAGAAGCAGACGCTGAACGCCCGGGACGAGTCCATCAAGAAGCTGCTGGAGATGCTGCAGAGCAAGGGCTTGCCCTCCAAGGCCATGGAGGATGACAACGAGAGGCTCCGCAGGATGGCCGAGGCTGAGTCGCAGGTCAACCACCTGGAGGTCATCCTGGAccagaaggagaaggagaatcTGCATCTCAGAGAGAGAGCACCAGACCATAACGAGAACGATACGGCTCCTTTTGATGTTTTGCTGACTCGCCCAGAGAAGATGGGATCGCCCACGGTTGAGGCCCAGTTCAGCGAGGGTTCATTAGACCAATATCGGTCTGAGGGAACAGATGAAAAAGGGGCGACCATGAGTCAAGTGCGGAACGgaagtgtattttatgttttgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 894541 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 1035891 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 1120261 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 1166959 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 1693863 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 211925 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 313196 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 344141 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 433090 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 674066 53009878 ~ 53010218 (-) True G19663
AMCG00017261 mRNA downstream 16478 52304756 ~ 52316156 (-) True AMCG00017261
AMCG00017264 mRNA downstream 42450 52285069 ~ 52290184 (-) True AMCG00017264
AMCG00017258 mRNA downstream 63077 52258966 ~ 52269557 (-) True AMCG00017258
AMCG00017259 mRNA downstream 75632 52247004 ~ 52257002 (-) True AMCG00017259
AMCG00017260 mRNA downstream 114529 52212817 ~ 52218105 (-) True AMCG00017260
AMCG00017262 mRNA upstream 29012 52364824 ~ 52374860 (-) True AMCG00017262
AMCG00017268 mRNA upstream 56994 52392806 ~ 52403791 (-) True AMCG00017268
AMCG00017266 mRNA upstream 80348 52416160 ~ 52428053 (-) True AMCG00017266
AMCG00017265 mRNA upstream 114304 52450116 ~ 52474341 (-) True AMCG00017265
AMCG00017269 mRNA upstream 186937 52522749 ~ 52538254 (-) True AMCG00017269
TU24132 other downstream 472492 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 882848 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 882848 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 897566 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 3838285 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 522778 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 1047528 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 1050284 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 1050284 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 1050284 53386096 ~ 53387709 (-) False G19730

Expression Profile