RNA id: AMCG00017266


Basic Information

Item Value
RNA id AMCG00017266
length 3659
RNA type mRNA
GC content 0.53
exon number 23
gene id AMCG00017266
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52416160 ~ 52428053 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAGCTATAAATACTTGTGTAAACATGTAGCTATCAACGCATGTACGTAAAGATGTGTAGCTATCAACAAATGAATGTAAAGACATGTAGCTGTCTACACATACATGTTGGAGATTGCCAGTCTGTACAGGGAGCAGAGTCAGTTCCCCTCCCTGTCGAAAGCCACAGTTGGCCCAGTGATCACTTCCCAGTACGGTGGAAAGTACTGCAACATCTACACAGAGTGGAGTCAGCGTGACCTGGAACGCAACGAGAGCGTCAAGTTCTGCAGGCAGTACATTGTGTTTCACGATGACAAGTCTGTGGTGTTTTCGGGACCATCTGGAAACTGCACCGAGATCAAGGGAGAGCTGCTGAGTTCCGACTCCCCATCAGGAGGTCTGAAAGCCGTGATCCGGGACTGCAGCGTCAAGGCCGAGGAGAAGCAGTTTCTGGAGATCTGGAGCAAGAACTGCAAGGTGAAGAGCATCAATCTGACGGCACTGAAGAAGCACGGGAAGGTGTATGAAGATGaTCAGTTTGGCTGCCTGGTGTGGTCCCACTCGGAGACCCACCTCCTCTACGTGGCCGAGAAGAAGAGGCCCAAGAAAGAGTCATTTTTCCAGACGGAATCGCCAGAGACCAGCTCTCTGGGCGATGAAGATGCGGCCCTGAAAACCGAGAAGGAAGAAACTGTGAAGGGTGACCAATTTGTGTTTCATGAAGACTGGGGGGAGACGCTAGTCAACAAGAGCATCCCGGTGCTGTGTGTCCTGGACATCGAAAGCAACAACATCTCAGTGCTGGAAGGAATCCCGGACAACATCTCGCCCGGCCAGgCGTTCTGGGCTCCTGGGGACACGGGGGTGGTGTTTGTGGGCTGGTGCCACGAGCCGTTCAGACTGGGGCTGAAGTTCTGCCCCAACAGGAGgTCTTCGTTGTTTTACGTGGATCTGACAGGTGGCAAATGTGAGCAGCTCTCCTCAGACAACAGCGCCGTGTACTCCCCCCGCCTCAGTCCGGACCACTGCCGCATCGTGTACCTGGAGTGTGGGGTGTTCGGGCCGCACCACCAGTGCAGCCGGCTCCGCATGTACGACTGGTACACAAAGAAGACGTCCGTGGTGGTGGATGTGGTCAACAGGCCACAGGAAGGGGGTTTTGCCGGGATCTACACCACGCTGCTCTCGGCCTGTTGCTGGTCCGCTGACAGCCAGAGAGTCCTGCTCAGTTCCCCTCAGAGGGGGAGGAAGGATCTGCTGGAGGTGGATATAAACTCGGGCAACGTCACGTCGCTGACAGCAGGGTCAGATATGGGCAGCTGGACTCTGCTGACCGTCGAGCGCGACCTCATGGTGGTCGGCTGCTCTTCCCCGAACTGTCCGCACAGCCTGATGGTGGGTTTCCTGCCCCAAGCGGGCTCACAGGAAGGGGTCAGCTGGGTGTCTCTAGAGAAGAGCGACCCCCAGCCCGACATCGAGTGGCAGGTGTTGACTTTCAAACCCCCCCCTGAGAATGAGAACAGCACATATTCTGGATTGGAGTACGAAGCCCTTCTGTTAAAACCAAAACTCGCCGAACCAGCAGAAAAACTGCCCCTCATAGTCACCCCACACGGAGGGCCCCACTCAGTGATCGTGGCGGAGTGGCTCCTGTCCTCCGCAGCGCTCTGCAAAATGGGGTTCGCTTTGCTTTTAGTCAACTATCGGGGATCCATCGGATACGGCCAAGACAGCATCCTCTCTCTGCCCGGCAACGTGGGCCACCAGGATGTGAAGGATGTGCAGTTCGCCGTGGAGAGCGTCCTGAAGACGCAGCCCCTGGACGAGCGCAGGGTGGCCGTGGTGGGGGGCTCCCACGGGGGGTTCCTGGCCTGTCACCTGATTGGACAGTACCCCGACTCCTACCGGGCCTGCGTGGCTAGGAACCCGGTCATCAACCTGGCCTCCATGATCGGCAGCACCGATATCCCCGACTGGTGCATGGTGGAGGCAGGCTTTCCCTACAGGACCGACACGCTGCCCGATCCGGCTGTGTGGGGACAGATGCTGCAGAAATCCCCGATCCGATACGTCCCGCAGGTGAAGACGCCCGTCTTGCTAACGCTGGGAGAGGAAGACCGTCGCGTTCCCAGCAAGCAGGGCCTGGAGTTGCTGTGGTACCCAGGTAACAACCACTCCCTCTCCAAGGTGGATGCGGAGTCGGACGGGTTCATGAACATCGCCCTGTGGATCATCCAGCACCTGTCCGTCTGACCGGCGCcgcctcctctctctctatctctctcataACGCAGCACTAACCGGATCCAAAGGGCCCGCCTTCACCTCTCCGACGTCGAGCCCATGATCGGACTTCACACCCAACGCGCTCGAAAACGGTTTCTCTGTTCTCTACTCGTTACACTCTTATTGGCTGTGggtttaatcttttaaattaacACTGTAAAATACCGTCAGAGGAAGCGTTCATGCCGCTGGGATTTGTTCTGTGATGGcctgtacattttaatcttgCACACTACGGCACTGGTAGGAAACACTCAAAGCTCCGTGTGGCATAGACGGCAGCGTTACGGTACTGAAACTGCAGATTGACATTTGATCAAAAGCCACTTCTGCTTATTTCTGACAGCCTCACCTGCACTTGTGGTCTCCTGGACACGTTTAATGCATCATAAGTAGCAgctgaaaaatacacacatacgatcattatttttagttttagccGTGCAGATTTTGTGACGGTACTAAAATCCTTTAccttgatgttgttttttcactgaaAAGTTCCAGAAAAGTGaattgtgtcattgtgtcacCCTCAAAGTTTCACTTCCCCTCCTTAAAATATCTAAACAGTGGGCTTTTATGTAAGCGCCacctataaaaaacaaaatccatttaaaCAGCCCAGCTTAGAGAGGAAGAGGATTTGAGAACCAGTACCAGGCGCTGTGGAACGGTTGCGTGTTGTGATATGTGGGCCGCGCCTTGTGATGTGGGGGGGAGAACTGGAAGAGGAACTGTCATCTCCAGTGTGTCCTCCCCTACCTTCCTCATTTCCTCTAATTTCTCTGCCTGCTGTCCTCCGTCGGTTATGTTAGTCTCTTCATTTTCTCCAGCGGTGTTCAGTGTGGGGTACAACTTCCCTCCCGTTGCTCTTTAAATCCGTGCAGAAGTTGCAGTCGCGCCACATTGGGGGGCTTCTCCGGGGTCTCAAACCAGTGTGACGCTCGGCAGGGTGTGCACGACTCTTACAGGAGGGGACACGTCGGTTCTGCACCTTCCAGTCCACCTTCTGGTTTCCAGTCGCTTTTGAATTGTGTGTTCGTCCGAGGGGGAAAAGTGGACGTGTCCGGTTAGGAAACGAAGGAGAAGGAAAATAGGGAGGCAGTCACTcgtgaaacacatttttatgcaACGAGAAATATATCAAATGCAAGCGTGATCGTAATCTACATCTTTTAAGGCTGTTTCTGTGCCATTCAAAACACTGTGCTTCCATGTCAACACTTCCAATGTTGTGTGAACGGTTTCTGACACCCTCACACAAAGACACTACTATAAACCTTTCGGCCAACACGACTCCTTGTGTTTAAATGATCGTTTGGGGAATAAACTGTGTGGGTTTGGGTGCGGGTTGTAATGTACTCTCTTTCTGACTGTTCTAAcaatga

Function

GO: NA

KEGG:

id description
K01303 APEH; acylaminoacyl-peptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 978067 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 1119417 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 1203787 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 1250485 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 1777389 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 119684 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 220955 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 251900 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 340849 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 581825 53009878 ~ 53010218 (-) True G19663
AMCG00017268 mRNA downstream 12369 52392806 ~ 52403791 (-) True AMCG00017268
AMCG00017262 mRNA downstream 41300 52364824 ~ 52374860 (-) True AMCG00017262
AMCG00017263 mRNA downstream 80348 52332634 ~ 52335812 (-) True AMCG00017263
AMCG00017261 mRNA downstream 100004 52304756 ~ 52316156 (-) True AMCG00017261
AMCG00017264 mRNA downstream 125976 52285069 ~ 52290184 (-) True AMCG00017264
AMCG00017265 mRNA upstream 22063 52450116 ~ 52474341 (-) True AMCG00017265
AMCG00017269 mRNA upstream 94696 52522749 ~ 52538254 (-) True AMCG00017269
AMCG00017270 mRNA upstream 137243 52565296 ~ 52566709 (-) True AMCG00017270
AMCG00017272 mRNA upstream 167627 52595680 ~ 52605465 (-) True AMCG00017272
AMCG00017273 mRNA upstream 181218 52609271 ~ 52616058 (-) True AMCG00017273
TU24132 other downstream 556018 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 966374 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 966374 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 981092 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 3921811 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 430537 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 955287 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 958043 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 958043 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 958043 53386096 ~ 53387709 (-) False G19730

Expression Profile