RNA id: AMCG00017268


Basic Information

Item Value
RNA id AMCG00017268
length 3210
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00017268
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52392806 ~ 52403791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACCACCTCGAACAACTGACCCCGTATCACACATCGCTTCACACAGGAGTGCACAAGACACCGGCAGGAGACGAGACGAGCAGAAGAAAAGCTGTGATGGATGCTGCGTTGTGTCTCGGCACACCTTGTGAGCACAtagAAAATGAAGACCAAATTAAGATGATTCTGgCTGCTCTGAGATATAAGGCACTTCTGTTCTACGTGTGCAACCTGCTGCCGCTGGTCATAACTACATTTCCCAAATTCTTCCCTTGTGACGATTACCATAATTTTACAGAGGTGGATTGTGGGAGGAGAGGCTTAACCCACGTTCCTCGGATCGAATCCCTGTTGGTGATTTCTCTCAATCTAGATGAGAACAGCATTCAGCTGGTGAGGGGCGAAGCATTCGCCGGGGTCCCAAACCTGCAGAATCTCAGCATCAAGTGGAACTGCCCTCCTGTAAATCTGAGGCCGCTGGGCTCCCCTTCCTGCCAGATGGTGATCGAGGCCGATGCTTTTGTCCATCTTGAAAAACTGAGCAACCTTTTCCTGTCTGGTAATAGCCTGACATCTGTCCCAAAGCTCCCCTCTGGCCTGCAGATTCTCAGCTTGGAGGGCAATAAAATCTTCAAGATCACCAGCCCCCTGGGGACCCCACAACTCAAGTACCTCAGTCTGACTAAAAATTGTTTTTATGCCAACCCCTGCAATGAGACCTTTTTTGTGAAGGAGGAAGTGTTCCATGATTTGCCAGTCTTACAAAATCTCATGCTGGGATTTAATAACATCACCAGGGTCCCCTTGGGCCTTCCCCATTCATTGGAGAGCCTTGATCTCAGGGAGAACAAGATCAGTGAAATCAGTGAGATGGACTTTGCCAATCTCACCGGACTCAAGAACCTAAACCTGGAGTGGAACTGCCAGCGTTGCGACCACGCAGCCCAGCCCTGTTTCCCCTGCCAGAACAATGCCTCCATTAAACTGTCTCCCAAAGTTTTCCAGAATCAAACAGGTTTAGTCTCCCTGAGCCTTCGAGGGAACTCTCTCACAAACATATCGGACGCGCTCTTCGAGTCCCTGGTCAGCCTCTCAAGTCTGGATCTGTCTGACAATCTACTTGCCTACGAGATCAGAAACGGCACCTTCTATAAACACTTGAAGAATAACATGATGGACTTTCCCCCACCATGCGCATCCAACACATATGGATCAGCTCATGAACACCAAGGCCAAGGAGATGGTTTGCCTGTGGCTCGTTATGTTCTGAACACAAAGCCTGAGCACCAAGGGGAAATCAATAGGAGCAATTTAAATCCAGATATGTGGTACTTCCAAAAGAAGTATTGTAAAGACAGactgttttttgatttgtcccAAAACAACATCTTGTCACTCCGGGAAAATATTTTCCTCGGTATGGAGTCAGCTGTTTGTCTGGATCTGTCCTCCAATTACATAAGCCAGTCACTGAATGGAAGTCAGTTTTCAGCACTGAAGAATCTCTCTTACCTCAACCTGGCGCAGAACAGAATCGATCTGTACTATGACAATGCTTTTCAAGAGCTGCGTGGGTCACTTAGAGCCCTGGATCTCACCAATAATAAGTATCACTTTCTTATGAAAGGTATGGGTCATAGTTTTGAATTCCTCCCCAGTCTGATGTCTCTCAAGGTCCTCAGTTTGTCTCAGAACAATATTGGCATCCGCATTTCTCCCCGACTTGTGAGTTCCTCTCTGAAGTACCTTTTCTTTTCCGACAACCGCCTGGATATAATGTGGGACCTCAAGTTTCACCAGTATCTCGATTTCTTTCAGAATCTGAACAATCTAACTTTCCTGGACCTCTCCAATAACAAGCTGAGGTCCATTACCCCCGAAGCACTTCACAATCTTCCACAATCTCTTGAGACCCTCAAAGTCAACAACAATCGCCTGAACTTCTTTCCTTGGAGTAACCTCACAGTTCTGCATAAAATTGTGTACCTGAACCTCAGCTATAATTCCCTCTTTGGCCTGCCAAAAGAGGCCATAGACTTTGGGAAGACATTACAAATCCTAGATTTAAGCCACAACATGATCAGTCGGCTTCCCATTCTTTTCTTCAGCAACGCTGCTACTCTGAAAACCCTCCTACTCAATCATAACAAACTCAAGTTCTTCAATTCCCAAAACCTGCCTTTTCTACTGCGAGGTAATCTCTCTTCCCTGTCCCTCCACGCAAATCCCTTCATCTGCACCTGTGACTCCTCCTTGTTCATAGATTTCCTTAGAAACACCAAGATAAGCATCCCATACCTCAGTACCGAAATTACATGTGGATTTCCGGAGTCTCAGCTAGGAGAGAAGGTCCTTTCTATGGACCCTCGCTCATGCCAGGAGATATACGGGAGCCTGTCATTCATCTGTACTTTCATACTGACCATCCTGTTCATCGCCATGCCACTCCTGAAGAAGCTCTTTGGCTGGGACCTTTGGTACAGTCTCCAGTTCATCTGGGCTGGAAACAAAGGCTATTCCCTGCTCACAGAGGCTGATAACCAATTTGATGCGTTCATAGTTTTCGACACCAGAAACACAGCAGTGATGGACTGGGTTTTTAATGACCTACGGGTCAATTTGGAGGACAGGGGGAGACCGAGGTTCAAGCTCTGCTTGGAAGAGAGAGACTGGGTCCCGGGGAACGCGTGCATTCAGAACTTGTACAATGCTGTTTACAACAGCAGGAAAACTGTCTTCGTTCTCACCCGCGCGGGCTCCATCTGTGGGGTCCTCAGGCAGGCTTTCTTTATGGTTCAGCAGCGCCTTCTGGATGAGAAGGTGGATGTGGTTGTCCTGGTCCTTCTGGATGAAATTTTCCCCAAGTCCAGATATATCCAAATGAGGAAAATACTCTGTCGGAAGTCTGTCTTAACCTGGCCAAGGAACCCGCGTGCCCACCAGCATTTCTGGAACAGCATGAGATCTGTCCTGGGGTCAGACAACAGCCAGAACTATGATTCGAATGTCAGTATCAACTGTAAGACTCCAGGCTCCTATTTTACTGTGGCCAGACTTTCCTCGGGTCTCCATGTGTTTAGCAATGAGGAAGCAGCGCCTCTTAGTGTCACAATGACTTTTGTGCCCACTGTAAATAATCAGCCCTCCACCTACACCACCCATCACCACCAAAACACCATGAAGAAATCAACAGAGCAACAGCATCTGTCCAGGCCCATTCGCCATTAA

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 954713 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 1096063 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 1180433 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 1227131 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 1754035 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 143946 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 245217 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 276162 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 365111 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 606087 53009878 ~ 53010218 (-) True G19663
AMCG00017262 mRNA downstream 17946 52364824 ~ 52374860 (-) True AMCG00017262
AMCG00017263 mRNA downstream 56994 52332634 ~ 52335812 (-) True AMCG00017263
AMCG00017261 mRNA downstream 76650 52304756 ~ 52316156 (-) True AMCG00017261
AMCG00017264 mRNA downstream 102622 52285069 ~ 52290184 (-) True AMCG00017264
AMCG00017258 mRNA downstream 123249 52258966 ~ 52269557 (-) True AMCG00017258
AMCG00017266 mRNA upstream 12369 52416160 ~ 52428053 (-) True AMCG00017266
AMCG00017265 mRNA upstream 46325 52450116 ~ 52474341 (-) True AMCG00017265
AMCG00017269 mRNA upstream 118958 52522749 ~ 52538254 (-) True AMCG00017269
AMCG00017270 mRNA upstream 161505 52565296 ~ 52566709 (-) True AMCG00017270
AMCG00017272 mRNA upstream 191889 52595680 ~ 52605465 (-) True AMCG00017272
TU24132 other downstream 532664 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 943020 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 943020 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 957738 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 3898457 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 454799 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 979549 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 982305 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 982305 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 982305 53386096 ~ 53387709 (-) False G19730

Expression Profile