RNA id: AMCG00017269


Basic Information

Item Value
RNA id AMCG00017269
length 1311
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00017269
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52522749 ~ 52538254 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATCGTTGTGTGGCCGAGCGGCGTTTACAAATGCGAAAGCTCGTGTTTATAGgTCTTTACTTCTTTCAGAACCAGCCAAGTCACAGAGACAATAAAAGCGCTGTCCCTCGGGTTATGTTCGAATCTCTTATCGTTGTATCCCCTCTAAACCAGATAGATTCCCACACTGCATGGCTGGCACAGCGCGTGACAGATGAGTATCGACCCCCGGGACATCTGATCGGCAGAAAATATGAAGCTCAGCATTTGCTACAGCTCAAGACACCAACAGTCCAGGAGTGGCTCTGTTTGAATTGCCAGATGCAGAGAGCCTTGGGAATGGACATGACAACCTCTCCACGCTCCAAGAGCCAACAGCAGATCCACTCGCCCTCGCACCAGGCCAAACCTCTCCCCCCGGTCCAGCATCCCCCCCAAGCCCAGCCCCAGCCTCAGCCCCAGGCCAAACCCCAAGCCCAGCCCTCCCCGGGACCGCACAGACAGTCGGGTCCGATTCCAGCCTCCCAGCCGGGGCCACAGAGTGGAACTGCATCTCAGCATATGAAACCCGACCAGTTCGGTCAACGAGGGCCAGCCAGCCAGGCCCAGGTCAAGCCAGATCCCACAGGCAGGAGGGACCAGCCTGGGATGGCACCCATCCAGGGCTTGGCCAAGGCCCCGTCCCAGCCGGACCTGGCACGTTCCTCTCCTCAGCACCAACCCACCAGGGCAGAGCAGAACCGGAGCGCGGGCAGCTCTCCCGCTAGGGCGCCAGGCGGTCCTCAGGAGCAGCCACAGGATGGCCTGACTGGGAAGCTGTTTGGGTTCGGGGCATCCCTGTTAAACCAGGCCAGCACCCTCATATCCGTTGACCCACAGCCCACGATGCAGCCACAGCCGTCCCCCGCCAAGGTGGCTCCCAAGGTCTGCAACTTGTGTGGCTTCAACCCCACGCCCCACCTGGTGGAGGTGGCAGATTCAAGCAGCGCCCTTCATTTCACTGTCAGTGACTGTGTGAGGCTTCGCACCCACTGCGTACACCTGACAGAAATAGCTCCTCCAGTACGGCGCCAGTGTCGAGCGAGGTTGCGAGAGATCAGCGGTCCTTGGCAGTGCCATGTGAGCGCTGGCACCGGCCGGAAACCCTACAGAGAGGTCCAGAGTCCATGCCGTGCCCTCTCAGCACCGAGGCGAGGGGCAGAGTCATGCAGGGTACGGGGGTCTGTGACGGGGAGGgcagtGAACCAGGAACTGAAAGACTTCAGTGTAAGAGTTGAGATCCTGATTCTTGAGCCCAGAATGCCAGGCTCCGACAACCAGACCGGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23977 lncRNA downstream 1084656 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 1226006 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 1310376 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 1357074 51165358 ~ 51165675 (-) True G19259
TU23756 lncRNA downstream 1883978 50637869 ~ 50638771 (-) False G19150
TU24212 lncRNA upstream 9483 52547737 ~ 52548050 (-) True G19516
TU24251 lncRNA upstream 110754 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 141699 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 230648 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 471624 53009878 ~ 53010218 (-) True G19663
AMCG00017265 mRNA downstream 48408 52450116 ~ 52474341 (-) True AMCG00017265
AMCG00017266 mRNA downstream 94696 52416160 ~ 52428053 (-) True AMCG00017266
AMCG00017268 mRNA downstream 118958 52392806 ~ 52403791 (-) True AMCG00017268
AMCG00017262 mRNA downstream 147889 52364824 ~ 52374860 (-) True AMCG00017262
AMCG00017263 mRNA downstream 186937 52332634 ~ 52335812 (-) True AMCG00017263
AMCG00017270 mRNA upstream 27042 52565296 ~ 52566709 (-) True AMCG00017270
AMCG00017272 mRNA upstream 57426 52595680 ~ 52605465 (-) True AMCG00017272
AMCG00017273 mRNA upstream 71017 52609271 ~ 52616058 (-) True AMCG00017273
AMCG00017271 mRNA upstream 83511 52621765 ~ 52637606 (-) True AMCG00017271
AMCG00017274 mRNA upstream 131103 52669357 ~ 52670496 (-) True AMCG00017274
TU24132 other downstream 662607 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1072963 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1072963 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1087681 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 4028400 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 320336 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 845086 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 847842 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 847842 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 847842 53386096 ~ 53387709 (-) False G19730

Expression Profile