RNA id: AMCG00017270



Basic Information


Item Value
RNA id AMCG00017270
length 633
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00017270
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52565296 ~ 52566709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCAGTCAGGACTGGAGGTGCTTCTGCCTCGGCCCTCCACGTACCCTTGTTCCATGCCGGAAGGCCGGGCCAGACTGACCACGTCACCGCTCCCAAGCCGGGGGCGCAGACTGGTGGGGGGCGACCCGAGACATATCGACTGGCCCAACACGACAGCCCTCGTGAGCAGCCCTCCccggggcaggggcaggggcatgTCTCCCGGCGCTCCCTCCAGGTGGACGTCAGCGGCCGTTCAGGGAGGTCCCCCTCGGTGTCCCCAGACCGTGGCAGTGCCCCCACCTCCCCCTACTCTGTGCCCCAGATCGCGCCCATGCCGAGCAGCAAACTGTGCCCGGTGTGTAACAATACCGACCTGACCGCCTCCCACGACCAGCCAAACTTCAACACCTGTACCCAGTGCCACGCCATGGTGTGCAACCAGTGTGGGTTCAACCCCAATCCACACCTTACTGAGTTATGTATGAGGCGTATCACACACGATATTTTCATTAAACTCTCTGATACCAAGCTGTCAGGTTGCCTCATGCTATCAGTCACCTCATCCGACCTGCAGATGTTCCCTTTGTCACTCAACCAATTTACAGATCAATTAGATCTGGAGTCCCCTTTACGTTCGCAGGCcatctaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU24212 lncRNA downstream 17246 52547737 ~ 52548050 (-) True G19516
TU23977 lncRNA downstream 1127203 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 1268553 51295831 ~ 51296743 (-) True G19316
TU23900 lncRNA downstream 1352923 51200931 ~ 51212373 (-) False AMCG00017232
TU23886 lncRNA downstream 1399621 51165358 ~ 51165675 (-) True G19259
TU24251 lncRNA upstream 82299 52649008 ~ 52665182 (-) True G19548
TU24254 lncRNA upstream 113244 52679953 ~ 52691186 (-) True G19551
TU24316 lncRNA upstream 202193 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 443169 53009878 ~ 53010218 (-) True G19663
TU24402 lncRNA upstream 639256 53205965 ~ 53215336 (-) False AMCG00017299
AMCG00017269 mRNA downstream 27042 52522749 ~ 52538254 (-) True AMCG00017269
AMCG00017265 mRNA downstream 90955 52450116 ~ 52474341 (-) True AMCG00017265
AMCG00017266 mRNA downstream 137243 52416160 ~ 52428053 (-) True AMCG00017266
AMCG00017268 mRNA downstream 161505 52392806 ~ 52403791 (-) True AMCG00017268
AMCG00017262 mRNA downstream 190436 52364824 ~ 52374860 (-) True AMCG00017262
AMCG00017272 mRNA upstream 28971 52595680 ~ 52605465 (-) True AMCG00017272
AMCG00017273 mRNA upstream 42562 52609271 ~ 52616058 (-) True AMCG00017273
AMCG00017271 mRNA upstream 55056 52621765 ~ 52637606 (-) True AMCG00017271
AMCG00017274 mRNA upstream 102648 52669357 ~ 52670496 (-) True AMCG00017274
AMCG00017278 mRNA upstream 178598 52745307 ~ 52745789 (-) True AMCG00017278
TU24132 other downstream 705154 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1115510 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1115510 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1130228 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 4070947 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 291881 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 816631 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 819387 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 819387 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 819387 53386096 ~ 53387709 (-) False G19730

Expression Profile


AMCG00017270 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
End of interactive chart.

AMCG00017270 Expression in each Bioproject

Bar chart with 5 bars.
AMCG00017270 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
End of interactive chart.