RNA id: AMCG00017277


Basic Information

Item Value
RNA id AMCG00017277
length 1538
RNA type mRNA
GC content 0.66
exon number 5
gene id AMCG00017277
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52746059 ~ 52751516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGACTCACTGAACCTTAACCTGATATTATGTGACAAGAGCACAGCAGTGACTTGTGTTGTGTGACGGGGGGGCTGGACCAGCCATGGCTGCTGCTCTGTGCCGAGTCAATGCTAAGCTGTGGGCTGAAGAGGAggctgaagaggaagaggaggaggaggaggagagacaggTGGCCAGGTCTCCCATCTCTCCGCTGGGCTGTGCCGTGTCCCGCTGTGCTGCCCTGCTCCTCGCCCAGGTGCTGCAGGTGGTGCTGTGCCAGGGTGCCAAGCAGGCGGTGCCCCCTGTGCTGCCCGGGGAGCCCTTCCTGGTGTACTGGAATGCGCCCACCCAACAGTGCCACATCCGGCATGGGGCGCCTCTCCCCCTGCGTGGGTACGGCATTGTGGCCAACCCCGATCAGGCCTTCTCTGGCAATCGCCTCACCATCTTCTACCTGGACCAGCTGGGCCTGTACCCCTACTACAACCGCGGCGGGCAGCCGGTGAACGGTGGGTGCCCCCAGAATGCCAGCCTGCGGGCACACAGTGAGAAGATGATCGGCGATGTGCAGCGCGCCCTGCCCTGGCCCAGCTTCTCCGGCCTGGCCGTGGTGGACTGGGAGGAGTGGCGGCCACAGTGGGAGCGCAACTGGGCCAGCAAGGACGTGTACCAGCGCAAGTCCCGGGAGCTTGTCCACGCGCTGCACCCGCACTGGCCCCCTGGCAAGGTGGAGAAACAGGCCATCTGGGAGTTTGACTCATCGGCACAGCAGTTCCTTGTGGAGACACTGCGTCAGGGCCGGCGCCTGCGCCCGGCGGGGCTGTGGGGCCTGTACCTGTTCCCCGACTGCTACAACCACGAGTACCAGCGCGGCCTGCACAACTACACTGGCCACTGTCCCCCTCTGGAGCTGCGGCGCAACGACGCCCTGGGCTGGCTGTTCGCGGAGAGCAAGGCGCTGTACCCCTCGGTGTACCTGGTGGAGGCGCTGCGCTCCTCGCCCCAGGGCCGGCTGTTTGTGCGGGCACGGGTCCAAGAGGCCCTGAGGGTGGCGGACTCCACTGAGTCGCCCACTGCGCTGCCCGTCTTCGTCTACAGCCGCCCCTTCTACGCCTACTCCCTGACGCCCCTGACACTGATGGATCTGGTGTCCAGTATTGGTGAGAGTGCAGCGCTGGGGGCCAGTGGAGTGCTCACTCTGGGTCCCTACGTGGCCAACGTCACCACGGCGGCTCGCCTGTGTAGCCAGCAGCTGTGCAGCAGCAGGGGGCGCTGTGTGCGCCGGGACCCCGAGGCCGACGCCTTCCTGCACCTCGATAGCCAGAGCTTCTCCATCGCGGTGCAGCCAGGGGGGGGGCGGGTCTCGGTGCGTGGGGAGCTCAGCCGGGCTGCCAGGGCAACGATGCGCAGCGCCTTCCAGTGCCAGTGCTACCAGGGCTGGGCTGGGGACAAATGCAAGAGCCTGGCGCACAGACCCAAGCCCGGCAGcaccctcctcttcctcctcctcctcctcgctgaCCTGAGCACCCTGTGGTCTCTCCCAATCTGA

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24254 lncRNA downstream 54873 52679953 ~ 52691186 (-) True G19551
TU24251 lncRNA downstream 80877 52649008 ~ 52665182 (-) True G19548
TU24212 lncRNA downstream 198009 52547737 ~ 52548050 (-) True G19516
TU23977 lncRNA downstream 1307966 51437880 ~ 51438093 (-) True G19330
TU23960 lncRNA downstream 1449316 51295831 ~ 51296743 (-) True G19316
TU24316 lncRNA upstream 17386 52768902 ~ 52769415 (-) True G19604
TU24389 lncRNA upstream 258362 53009878 ~ 53010218 (-) True G19663
TU24402 lncRNA upstream 454449 53205965 ~ 53215336 (-) False AMCG00017299
TU24425 lncRNA upstream 486690 53238206 ~ 53238409 (-) True G19687
TU24492 lncRNA upstream 666669 53418185 ~ 53419077 (-) True G19741
AMCG00017278 mRNA downstream 270 52745307 ~ 52745789 (-) True AMCG00017278
AMCG00017274 mRNA downstream 75563 52669357 ~ 52670496 (-) True AMCG00017274
AMCG00017271 mRNA downstream 108453 52621765 ~ 52637606 (-) True AMCG00017271
AMCG00017273 mRNA downstream 130001 52609271 ~ 52616058 (-) True AMCG00017273
AMCG00017272 mRNA downstream 140594 52595680 ~ 52605465 (-) True AMCG00017272
AMCG00017276 mRNA upstream 11595 52763111 ~ 52767644 (-) True AMCG00017276
AMCG00017284 mRNA upstream 20613 52772129 ~ 52795850 (-) True AMCG00017284
AMCG00017283 mRNA upstream 52204 52803720 ~ 52806431 (-) True AMCG00017283
AMCG00017286 mRNA upstream 60331 52811847 ~ 52814845 (-) True AMCG00017286
AMCG00017282 mRNA upstream 66523 52818039 ~ 52821117 (-) True AMCG00017282
TU24132 other downstream 885917 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1296273 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1296273 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1310991 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 4251710 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 107074 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 631824 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 634580 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 634580 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 634580 53386096 ~ 53387709 (-) False G19730

Expression Profile