RNA id: TU24289


Basic Information

Item Value
RNA id TU24289
length 1830
RNA type TUCP
GC content 0.54
exon number 3
gene id AMCG00017280
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52814253 ~ 52817369 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCAAATGTAAATCATACTCAGACTCATGACACACCgataaatacagtattatcaCACAATCCTCTATCAAATCTGACCTATGTCATAATATATGCCTAGGAAACAATCGTAGTTGAGAGAATATGAATAatttcataaattaatattgttattgtggTAGTCACTGATTGTCCACATGGTGCTGCGGGGCACGTTTGAGGGATGGGGGGTGAAAGAGCTGAAACGCCGCTGTGAAAAGGATCAGGGTGCGACTCGGCCAGCGATTCGTTCTGTCTGAACGGTGCAGTACGGGCTTGCGCATGCGCTCCACCTCAGTGAGGAGCGCAGAGGAGCGGGAGGGTGCAGCCTCTCTGTGTTtacaaataatactaatcaaaatcacttttattattattaatatttgtaaattaaacgGCTTGCATTTGATAACGGGCGCCACTGTCTGTCACGGAGCTACGTGTAACGAATCTGCCAGCGTGGGATGACAGTGTGACAGCAGACAGCGTCTCTCGGTGGAAAATGGAGGCTGTGGCCGCCGGGCCCGTCTCGCCCTGCTGACGGCACCGCGGGCGGCCGCTGCTCCACACGGCATGGCGCCGGGCTGTCACTCTCGCCGGGCAGGAGAGCCGTCGCTGTGAGGGATGGACGAGCCGTGGGACTGCGAGTTCGTGTCGCGCCTGCTGGACGGCCTGGTGTCGTTCCTGAGCGAGTTCGCGGAGGACTGGCTGGCCAACGACATGCGGGCGGCCGTGTTCAAGATCCTGCTGGCCTGGGTCGTGCTCAGCCTCGTCGCCATCCACTTCGCCTGGAAGGTCTACGGACACACGGTCAACGACATGTACTACAGACAGGgaacCGGCGGTCAGAACGGCGGCACCCCCGAGACTACGCCTCACCTCAGTGGCTGGGAGAGCGCGACGACGAGTGACGCCTTCAAGACGCACCGGGAGTGAGCCGGTCGGCCACCCACTGCCTGCACCTGGCCAGTCGGACTACAATACGCTGTGTCTCTGGCCAattggtggaggaggaggaggagtagtGTGTCCCTGGCTGCCTGTCCCGTCCCAGTCATTCCAGCTGGTCCACACCGCGGCACAGCCTCAGACACAGCAGAGTGCTGGACACTGGCAGAGATGCCGAGTTTTACCTTCCGAGGCTGGAGGACAGGGTGCGCGGGTTCTAGTCCAGTCCGATTGGTTCCATCTTCTCCTCTGTCTCTTTGCCCCCTCAGCCTCGGTGCATGAAGGCAGGACAGCATGGCCGCCAgaatggaattgttttgttggGGGGGCAGCTGCCCTTCCGGCCCGGATGCTTCGCACTGCCTGCAGGAACCCGCTGGGGTCCGTCTGCgggtcggtgtgtgtgtgtgtgggcacaCAGACTGGACTGATGATACTGTGGAGCAGGAATAACACTGTTCGTAAATAATAACCTTAATATccataataattaatgaataaccATCAGCTCTGAAAGTGTGATTTGATTTAGAATTGTGTTGTTGTGATGCTGTGGTTTAAAATGCTTGGTTTGCCTTGAGAGTCTTGGCTGTCCCTAATGGAagtgagaataaaataatggagAATGTGCTGGGATCTGGCCTGGGGTTTGTGGGGGGGGCAGCCCAGCCCTCAGTGACTGGAACGGACCACCGACTTGCCCTGATCAGACCTCAGAGAGGGAGTTTTAAACCGTCTGGGATTGCAGGTTCATTATAGAATCATATAAAGCATTTGATTGAATTCTCAGGCTTCCTGTCCGCtttaatttaagtcaaataaagCTAATTGTGAGTTCAAGTAAGTGACTGGCAGCTGAGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24295 lncRNA upstream 12042 52796932 ~ 52802211 (+) True G19588
TU24211 lncRNA upstream 266222 52547749 ~ 52548031 (+) True G19515
TU24151 lncRNA upstream 697912 52106948 ~ 52116341 (+) True G19465
TU24023 lncRNA upstream 1242259 51565289 ~ 51571994 (+) True G19366
TU23921 lncRNA upstream 1474136 51339913 ~ 51340117 (+) True G19292
TU24301 lncRNA downstream 33833 52850931 ~ 52854722 (+) True G19591
TU24335 lncRNA downstream 41055 52858153 ~ 52863723 (+) True G19617
TU24364 lncRNA downstream 116666 52933764 ~ 52935403 (+) True G19641
TU24365 lncRNA downstream 116666 52933764 ~ 52934977 (+) False G19641
TU24386 lncRNA downstream 190062 53007160 ~ 53007531 (+) True G19660
AMCG00017279 mRNA upstream 53749 52757463 ~ 52760504 (+) True AMCG00017279
AMCG00017275 mRNA upstream 70362 52741163 ~ 52743891 (+) True AMCG00017275
AMCG00017267 mRNA upstream 400342 52384020 ~ 52413911 (+) True AMCG00017267
AMCG00017253 mRNA upstream 799098 52005220 ~ 52015155 (+) True AMCG00017253
AMCG00017252 mRNA upstream 828885 51948217 ~ 51985368 (+) True AMCG00017252
AMCG00017287 mRNA downstream 4108 52821206 ~ 52822263 (+) False AMCG00017287
AMCG00017288 mRNA downstream 100954 52918052 ~ 52922397 (+) True AMCG00017288
AMCG00017290 mRNA downstream 113392 52930490 ~ 52933688 (+) True AMCG00017290
AMCG00017289 mRNA downstream 119802 52936900 ~ 52951955 (+) True AMCG00017289
AMCG00017297 mRNA downstream 437569 53254667 ~ 53275017 (+) True AMCG00017297
TU23712 other upstream 2252465 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 2261268 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 3092782 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 3410619 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 8158155 44654652 ~ 44656098 (+) True G18192
TU24309 other downstream 3963 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 518811 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 686334 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 973449 53790547 ~ 53792694 (+) True G19829
TU24611 other downstream 977528 53794626 ~ 53800301 (+) False AMCG00017325

Expression Profile