RNA id: AMCG00017284


Basic Information

Item Value
RNA id AMCG00017284
length 1971
RNA type mRNA
GC content 0.64
exon number 16
gene id AMCG00017284
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52772129 ~ 52795850 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCCTCTACTCTGTGTCCAACTGAGCAGCTCTGACAGgcAAGTGCAGCTCGCTGTCGACTGTAGCGATGCGCTGCCCCAAGCCCCGGCCAGCCCCCCAGCGCTGAGGACTCGGCACCGCAACGAGGGGGCAAGGACACACGTGGGACTGAAGATGCTTGTGGGGGGGCCAgtcatgggggtgggggtgctgctCCTGCTGTCCTGCCTGGCGATCCTCCCCCTCTGCGGCGCCTGGAGACCCGACCAGCCACGCCTGCAGTTCAGCTTCTCAGAGCTGGTGCAGACCGGGCGGCTGCTGTCCGTCCCCCTGGCCGCCGGGGACCTACACTCCCTCCTGCTGGACGAGGACGGACGCCGGCTCTACGCTGCCATCAGGGACCAGCTGGTGTCCACCAACCTGGACAACATCACACATGGCATCCGCAAGCCGTACAATCACACCCACCTGTACGTGTGCGGAACTGGGGCCTACCACCCGCGCTGCGCCTTCATCCCCACTGCCCCATTCCACAGGAGAGAGCGCCTGGCTGTGTTGCCCGGACAGACGGAGTGCGGGAAGGGCAAGTGTCCGTACGACCCCCACCAGAGGACGGCCAGCGCCATCGTcgACGGGGAGCTGTACGCTGGGATCTCCTCGGACTTCATGAGCCGCGACTCGGCGTTCTTCCGCAGCCTGGGCTCCCGCCACGTGATCCGCACAGAGCAGTATGACAACAAGTGGCTGCAGGacTCCAGGTTTGTGAAGGTGGCGTCAGTGTCGGAGAGCGATAACCCAGAGGATGACAAGGTATATGTGTTCTTCACTGAGCGCGCTCAGGAGGCGGAGGCTGCGGGGGGGAAGGTGGTCTTCTCTCGGGTGGCGAGAGTCTGCAAGAACGATGTGGGGGGGCAGCGCAGCCTGGTGAACAAGTGGAGCACCTTTTTGAAAGCGAGGCTGCTGTGCTCTGTCCCCGGGGCCGACGGCGTCCACACACACTTCGACCAGCTGCAGGACGTGTTCATCCTTCATGGCAAAGAAAAGACCAACCCGCTCATCTACGGCCTCTTCACCACGGCCAGTGACGTGCTGAACGGCTCAGCCGTGTGCGTGTACCGGATGCAGGACATCACCATGACCTTCAAGGGACACTTCTCCCACAAGGAGGGCCCGGAGTACAAATGGGTGGAGTACACTGGCCGAGTGCCCTTCCCCAGGCCGGGCACGTGTCCCAGCAAGACGTACGGCGGTTATCGTTCGACCCGGGACTACCCCGATGATGTCATCTTCTTCAGCCGCACTCACCCTCTGATGTTCGAGCCCGTGTCCCCGGTGGGCGGGCGGCCCCTGCTGGTGCGCGTGGGGGTGACCTACAAGTTCACCCGGCTGGCGGTGGACCGCGTGGAGGCGGTGGACGGGCAGTACGACGTCCTCTTCATCGGCACAGACTCTGGGCTGGTGTTGAAGTCCATCCATCTCCCTCAGGGCAAGGAGGTCAGTCAGGAGATCACTCTGGAGGAGCTGCAAGTCTTCAAGGATCAGTCTGCGATCACCGCCATGGCGCTATCGAGGAAAAGGcagcagctgtaCGTGGGCTCCCGGGTGGGCCTGGCTCAGCTGGCGCTGTTCCAGTGTGACCTGTACGGCCAGGCCTGCGCCGACTTCCGCTGGACGGCAGTGCGAGTGAAGCTGACTGTGCTCAGCCCCGCCCTGCCCCCGCGCCCGCCTGGCCCTGCCCACAGCCCCGCCCGCTTCGCACACCCGCACCCACAGAACCTCTGGTACCAGGACGTCATGACGCTCATCGACTACCCGTCCAAGATGGACCTGTACTGTGAGCAGGTGTGGCGCCGGCAGGgcaagaagaagaacaagaaatggAAGCTGGGGAAGCTGAAGCCAGGAGGGGAgcccagaggaggaggaggagggaggaagagCAGGAGCAAACCAGAGCCCCAAGCCCTGCGGTCCCCGCGCAGCACCTAG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24316 lncRNA downstream 2714 52768902 ~ 52769415 (-) True G19604
TU24254 lncRNA downstream 80943 52679953 ~ 52691186 (-) True G19551
TU24251 lncRNA downstream 106947 52649008 ~ 52665182 (-) True G19548
TU24212 lncRNA downstream 224079 52547737 ~ 52548050 (-) True G19516
TU23977 lncRNA downstream 1334036 51437880 ~ 51438093 (-) True G19330
TU24389 lncRNA upstream 214028 53009878 ~ 53010218 (-) True G19663
TU24402 lncRNA upstream 410115 53205965 ~ 53215336 (-) False AMCG00017299
TU24425 lncRNA upstream 442356 53238206 ~ 53238409 (-) True G19687
TU24492 lncRNA upstream 622335 53418185 ~ 53419077 (-) True G19741
TU24529 lncRNA upstream 656268 53452118 ~ 53527652 (-) False AMCG00017313
AMCG00017276 mRNA downstream 4485 52763111 ~ 52767644 (-) True AMCG00017276
AMCG00017277 mRNA downstream 20613 52746059 ~ 52751516 (-) True AMCG00017277
AMCG00017278 mRNA downstream 26340 52745307 ~ 52745789 (-) True AMCG00017278
AMCG00017274 mRNA downstream 101633 52669357 ~ 52670496 (-) True AMCG00017274
AMCG00017271 mRNA downstream 134523 52621765 ~ 52637606 (-) True AMCG00017271
AMCG00017283 mRNA upstream 7870 52803720 ~ 52806431 (-) True AMCG00017283
AMCG00017286 mRNA upstream 15997 52811847 ~ 52814845 (-) True AMCG00017286
AMCG00017282 mRNA upstream 22189 52818039 ~ 52821117 (-) True AMCG00017282
AMCG00017285 mRNA upstream 42653 52838503 ~ 52840644 (-) True AMCG00017285
AMCG00017281 mRNA upstream 49014 52844864 ~ 52853582 (-) True AMCG00017281
TU24132 other downstream 911987 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1322343 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1322343 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1337061 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 4277780 48489127 ~ 48494349 (-) True AMCG00017158
TU24337 other upstream 62740 52858590 ~ 52866419 (-) False AMCG00017292
TU24480 other upstream 587490 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 590246 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 590246 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 590246 53386096 ~ 53387709 (-) False G19730

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000052_01310118_01328526.mRNA True 2229 mRNA 0.51 17 CI01000052 1310084 ~ 1328526 (-)