RNA id: TU24309



Basic Information


Item Value
RNA id TU24309
length 587
RNA type TUCP
GC content 0.69
exon number 3
gene id AMCG00017287
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52821061 ~ 52834042 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caggTTGTGAGGAGTGCTGGGCACCAGTCCCCCGTGCCCTGGCTGTGAGGCCCCCATGGCCCTGtcccccctctgtctctcgCGCTCCggtcctctctctctgctgaggTCCCTGTCCCGGTCCCAGGGGGTGCCGGCACGGGCGATGTCTGCGGCACAGTGGGCGCGGGAGCTGTTCGGTGTGGCTGTGAAGGCCGTGCAGCCGGATAGCGTGCTGAGCTCCAGCCTGACCCTGCAGGGGGGACGCCTCCTGGTAGGGGGGCAGAGCTTCGCCATCGACCACAACCTGTACCTGGTGGGCTTCGGCAAGGCGGTGCTGGGCATGGCGGCGGCAGCTGAAAGGGTGGTGGGGGGTCACCTGGTGCGCGGCGTGGTCAGTGTGCCTCACGGCATACAGGACGCCCTCAGGAGGGAGGGCAGAGGTGAGATGCTGTTGAGTGCAGACAGCCGTGTGCGCGTCATGGAGGGGGCGATGCACAACCTGCCCGACAGCGCGGCACAGCAGGCGGCCCAGGACATCCAGAAGCTGGCCAGCGGACTGGGGGAGGGGGACCTGCTGCTGGCGCTGGTCTCGGgagtgggctctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24295 lncRNA upstream 18850 52796932 ~ 52802211 (+) True G19588
TU24211 lncRNA upstream 273030 52547749 ~ 52548031 (+) True G19515
TU24151 lncRNA upstream 704720 52106948 ~ 52116341 (+) True G19465
TU24023 lncRNA upstream 1249067 51565289 ~ 51571994 (+) True G19366
TU23921 lncRNA upstream 1480944 51339913 ~ 51340117 (+) True G19292
TU24301 lncRNA downstream 16889 52850931 ~ 52854722 (+) True G19591
TU24335 lncRNA downstream 24111 52858153 ~ 52863723 (+) True G19617
TU24364 lncRNA downstream 99722 52933764 ~ 52935403 (+) True G19641
TU24365 lncRNA downstream 99722 52933764 ~ 52934977 (+) False G19641
TU24386 lncRNA downstream 173118 53007160 ~ 53007531 (+) True G19660
AMCG00017280 mRNA upstream 3692 52814462 ~ 52817369 (+) True AMCG00017280
AMCG00017279 mRNA upstream 60557 52757463 ~ 52760504 (+) True AMCG00017279
AMCG00017275 mRNA upstream 77170 52741163 ~ 52743891 (+) True AMCG00017275
AMCG00017267 mRNA upstream 407150 52384020 ~ 52413911 (+) True AMCG00017267
AMCG00017253 mRNA upstream 805906 52005220 ~ 52015155 (+) True AMCG00017253
AMCG00017288 mRNA downstream 84010 52918052 ~ 52922397 (+) True AMCG00017288
AMCG00017290 mRNA downstream 96448 52930490 ~ 52933688 (+) True AMCG00017290
AMCG00017289 mRNA downstream 102858 52936900 ~ 52951955 (+) True AMCG00017289
AMCG00017297 mRNA downstream 420625 53254667 ~ 53275017 (+) True AMCG00017297
AMCG00017301 mRNA downstream 452387 53286429 ~ 53302089 (+) True AMCG00017301
TU24289 other upstream 3963 52814253 ~ 52817098 (+) False AMCG00017280
TU23712 other upstream 2259273 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 2268076 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 3099590 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 3417427 49402719 ~ 49403634 (+) False AMCG00017173
TU24421 other downstream 501867 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 669390 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 956505 53790547 ~ 53792694 (+) True G19829
TU24611 other downstream 960584 53794626 ~ 53800301 (+) False AMCG00017325
TU24632 other downstream 1019865 53853907 ~ 53855839 (+) True G19854

Expression Profile