RNA id: AMCG00017291


Basic Information

Item Value
RNA id AMCG00017291
length 3593
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00017291
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52924823 ~ 52929839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGCGCGGTGGATGATCTTGTGTGCTGGTGACGGTGGCAGCGGTGAAGTTGCGCTGGGAGTGTCACGATAGTTCACAACACACCTAGACATATTTAGGATCATAGTCATCTGGAAGTCTCGGTAAAGGGACAAAATAAAGCCCAGCGAACCGGCGAGCCGCCCCACAGCCTGGCCGCCCGAGAAGGCTTCTGTCACTTTAATTTCCACCGCCGGGGCCTGTGGAGGAAGGAGAGTCCTCGGGAAAACCTGTGGACGGAGGCCGacaggaggaggcagagagagggactgCGATCGCCGGAGACGTGTGCGGTCGTGCGGGGTAACACGTCTTCGCCTCCGTGACGAGGAGCCAGCCCGGGGTCCGCAGAAGGAGGACACGCAGAGGCCGCTTCCCTGGAGGTCTGAGTCAACGGAGGCTGTgaaagttttgttgttttgatttgtttttgtcaagttCGCCTCCATCCCCCCGCAGATGTGACTATTGGTCTCTCTCCGACACGGGACCAGCGCGTAATGAGTGCTAGTGGTAACAGGCATTTTCTTAAATGGGAAGAAAAGCTGCCACTCAAGCCGCAATACGAGGCGAGAGGACATCTGCTCAGAGCCAAGTGCAAAGACTGCATCTTAGTGATGTAAGAATGAGCCGCAAATGTGCGTGAACCCTGGCCTGGATGACAAAGGCCTCCTTCTCGACCGCTGTctattaattatttagtttcctttcttttttttattacattttctttgctttttaagTGTAAGGAACGATCACTCCTCAAGCTCTACTGAGAAGCTCAAGCTGCTATCGGTGTGACTGTGTCCTGGGCTCCTGTCACTCATCAGAGCTGCACACTTCCCAATGAGAGGCCTGGTTTCGCTCTAGTGTCTGAGTCTGTCGCAACAGCAGTGCATCAGCTGCTTGCTTGAATGCTGCCACTCCTTGAACTCTGGATGTTGCCTCTTCAGTCTTGCTGTGGGTTCTTTGGCGTCTCTTCGCTTTGCTGTGCTTGGCTCTGCTAACTGAGCAAACTGAGCTCGCTGGGACTTTAGCTGCAGCCACAGGAGAGCCACACGAGTTATTCCAGGGGAACCACACTGGGTAGAGATGAACCGCTACCTGCCGGTGGCCCGACAGCACTTTTTGGCGGCGCTGGCCAGCACCAGCGTAGTGGTGAAAGCCATCTGTgccacagtcctgctgctgTACCTCCTGTCCTGGGTGGTGGACACCGTCTATGTCCTCGGGGTGACCCCGGGGTACCTCTTCCCCCCTAACTTCTGGATCTGGACTCTGGTCACGCATGCGGTAGTGGAGCAGCATGTGTGGGATGTGGCGGTCAGCCTGGGGACCGTGATTGCTGCTGGCCGGCTGCTGGAGCCCCTGTGGGGGGCCCTGGAGCTGCTTATTTTCTTCGCCGTGGTCAACATCTCTGTGGGGGTCCTGGCTGGCTTCTCCTACCTGCTCACCTACATTGCCTCCTTCAACCTGGACTACCTGTTTGCTGTGCACGTCCATGGCATGCTGGGCTTCTTGGGGGCGGTTCTGGTGGCCCTGAAGCAGACTATGGGGGACTCCACGGTCCTGCGTGTCCCCCAGGTGCGGCTGAAGGTGGCCCCCATGCTAGTCCTTCTGGTGCTGGCTCTGCTGCGCCTCACCACCCTGCTGGAGACCACCGCCCCGCTGGCAGCCTACGGGTACGGCGTCCTGTCGGGCTGGGTGTACCTGCGCTTCTACCAGAAGCACAGCCGCGGCCGGGGGGACATGTCGGACCACTTTGCCTTCGCGTCCTTTTTCCCGGAGGTCCTGCAGCCCATGGTGGGGCTGGTGGCGGGCCTGGTGCATAGCATCCTGGTCAAGATCAAGGTGTGCCGCAAGACGGTGAAGCGCTACGACGTGGGGGCCCCCTCatccatcaccatcagcctgcCGGGCACCGACCCCCAGGATGCCGAGAGGAGGAGGCAGCTGGCCCTCAAGGCTCTCAACGAGCGTCTGAAGAGAGTGGAGGACCAGTCGGCCTGGCCCAGCATGGAGGAtgaggaggacgaggacgaaGGCCGGGCTGATGTGCCTCTCCTCGGGGGCCGAGACGCGCCATTGTTGGCGGGGGCCTCCGGGGGGCTGCAGGGCTCCTCCGGGCAGGAGTCCAGCATCATCAGCTTCGAGGACGTGCCCTCCAAGTCCTAACGCAGAAAAGACTAACCCTGCACCCAGATGACgcccacacacactgacacacactcacacatacacacacacggacgGACCCCCCGCTCACGTGTCTCATAGCGAGGTTTGGGTCGAGGACcatgaataaacacaaatcgaaaacaaaacctacatcttttttttttttttggggtggaGCAGGGATGAGTGTGTGGGAACTCTGGCATCACTTTAATATCACTTTTATAAACAACCGGATGGGTGGAGGCAACTTATTCTTCTCTCTGGGCTAGTAGATCCCACCGGAGTCTGTGCGCTCCGCTGGCCGCGCCCGATGCCGGGATCCAGGGCTGGACTGCGTCCGTGTCGTTTCCTTACAGAAGTAGGTTTCAGCTGCCAGTGCTTCGGTCTCGCCGTGTGTAGGTCACCCTTTGTGCTGCAGTTAGTTATGGTTGTGTACTCTTTGTAAGCCTATCTTTTCCACAGAGAACTACAGACACCTTCCATACTTactcttttgtttagtttaatttgggTTTTCTTTAACTGGTTAGAAATCTATTTGTACTTCAATAAATCTTCAAACTTGTGAAATATTCTTCACTTTGTTGCTTTATCATTGAGATATGAATTCATTCAGAGGTCCCGGATCGTCAGAAGGATGAGCCCACGGCCGTGTGTCTAGGAGGCTCAGTTGGGTTCTTTCAAACACGCTGATCTGGCAGAATACAACaacagcagaagcagcagcaccACAACCTCTGTGTTGTATGCAATCTGGACATCCAGCTCATAATCTGGCTGTTTGATCTCTCCTTGCTTTGTGACATCACTTGATGTGTAAATTAATGTCAAATCTGTAAGAATCTGCAGTGTAAACTGGTTAAACATTTTCAGCCCCTTCTAAGGAAGAAAAGATCACTGCAGCTCCAGCTAACGCAGCAATAAAGCACGTCTATAACTAATGAAGCTTCCCCCAGACACGGGGAACTGTGTCACAGGCTAACGTACACTTTGTGCAGACTGGAATGTCTGTGCTAATTGATTAAATAGTGCCGacctttgtctttgtctttgtcttggTTGTGTGTGATGCTCACGTTTCAGAACACTACTGGTATCATGTATTCATCCCAAAGATCGGTGGACAGTTCTGTGTGTTTCAATAAATGACTGAACTCTCTCTTCTTttctaaatgtgtaataaaGGACTTGTATCTAAAACCTGTGGCCGGCCCTGTGGACTGCTAGGTTCTTGTCATTGCCGTGTCTACATTCTACATCCCATTTGTGGACTCTTGACTGAAGGAAGACAAAACAACCctgctgttactgttactgacacggttgtattttgtatatatggtTGATCTGACAGCCGATCCAAACCACGTTAGTTCAGCACAGAGGCTGGGGCG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24316 lncRNA downstream 155408 52768902 ~ 52769415 (-) True G19604
TU24254 lncRNA downstream 233637 52679953 ~ 52691186 (-) True G19551
TU24251 lncRNA downstream 259641 52649008 ~ 52665182 (-) True G19548
TU24212 lncRNA downstream 376773 52547737 ~ 52548050 (-) True G19516
TU23977 lncRNA downstream 1486730 51437880 ~ 51438093 (-) True G19330
TU24389 lncRNA upstream 80039 53009878 ~ 53010218 (-) True G19663
TU24402 lncRNA upstream 276126 53205965 ~ 53215336 (-) False AMCG00017299
TU24425 lncRNA upstream 308367 53238206 ~ 53238409 (-) True G19687
TU24492 lncRNA upstream 488346 53418185 ~ 53419077 (-) True G19741
TU24529 lncRNA upstream 522279 53452118 ~ 53527652 (-) False AMCG00017313
AMCG00017293 mRNA downstream 6879 52912823 ~ 52917944 (-) True AMCG00017293
AMCG00017294 mRNA downstream 12180 52904340 ~ 52912643 (-) True AMCG00017294
AMCG00017296 mRNA downstream 24698 52884475 ~ 52900125 (-) True AMCG00017296
AMCG00017295 mRNA downstream 43810 52868327 ~ 52881013 (-) True AMCG00017295
AMCG00017292 mRNA downstream 58388 52858340 ~ 52866435 (-) True AMCG00017292
AMCG00017299 mRNA upstream 264994 53194833 ~ 53212519 (-) True AMCG00017299
AMCG00017298 mRNA upstream 352626 53282465 ~ 53286478 (-) True AMCG00017298
AMCG00017302 mRNA upstream 409667 53339506 ~ 53343302 (-) True AMCG00017302
AMCG00017309 mRNA upstream 462869 53392708 ~ 53396408 (-) True AMCG00017309
AMCG00017310 mRNA upstream 466781 53396620 ~ 53396829 (-) True AMCG00017310
TU24337 other downstream 58404 52858590 ~ 52866419 (-) False AMCG00017292
TU24132 other downstream 1064681 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1475037 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1475037 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1489755 51430855 ~ 51435068 (-) False AMCG00017234
TU24480 other upstream 453501 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 456257 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 456257 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 456257 53386096 ~ 53387709 (-) False G19730
TU24580 other upstream 746244 53676083 ~ 53728883 (-) True G19808

Expression Profile