RNA id: TU24337


Basic Information

Item Value
RNA id TU24337
length 5696
RNA type TUCP
GC content 0.47
exon number 5
gene id AMCG00017292
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52858340 ~ 52866435 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCGCTGCTGTGCGGGAGAGGACAGCGGCTCGGCGGTTCTGTGCGGGTCTCTGTGGGTCTCTGTGCGGGTTCGGTAAGCGCGGCGTCGGGCGGGACGATGTGAGGGGCTGGCGAGGGACCCCGCAGCTCGAGCACGGCCACGGCGCGCCGTTTCCGCATCTGTCCGACCGGCAGCCCGGAGCGAGCGGCGCTTCTCGCCGAGAAGTTGCACTGCTGGTCTGATACAGTAAGCGAGTGATTATCTGGACCAGCACCATCACCCCGACTTCCTTCGTCCACAAGATAATGTCCCGGCACTGAAATGGGAGGCAGCGGCTCCAAATCCCGAGGCTTCTGGCCGTTCGCCGGGTCGGGCCCCGGTGCGGATCCGCCCAGTGTCGGACATGACCAGTCCCTGGCCCGGCTGCGAGGCTCCAGGAGCGCCACGCCGTTCGTGTTCACACGGAGGAGCTCCCTGTACTATGATGAGGACGGGGACTTGGCCCATGAGTTCTACGAGGAGACGATCGTGACGAAGAATGGACGCAAGAGGGCGAAGCTGAAGAGGATTCAGAAGAATCTAATACCTCAGGGAATAGTGAAGCTGGATCACCCGCGAATCCACGTCGACTTCCCCGTCGTCCTGTGTGAGGTGTGAGGCCACGACGTCTGGAGGAAACACAGCCAGCGCCCTGCGACTCCGTCCCCCCCTTCTCCCTTTGCAGCCCCTCTTGAACTTCATTCTCGCCATGGTGTCTCGGAGAGCGGACAGTGCCGCCGCGTGGATGGGTCGCCTGCCCTGCCCAGCTCATGTGAGGTctggtgtgtgtgctgtgagaAGAAGGAGGTGGTGACGGGGGGGCACTGATGGGGAAAGCGTGAGAAAAAACACCGTGCAATAGCAACCCGGTTCCTCGCAATCTGTGAAACATACAACCCCATGTGCTCATGTTAGTGGGTTTTTAAGACACGATCTTGCTCCGTTCACTAATCTAGTCTAGCGTCCCTGGAATGTAAAAATCGGCAAAAACTGTCcgttcattttttttgtttcgttttgaCTCCTGGTTCTTAAGGTCAGTACGTATCTTTGTGACatcatgaaagaaaaacaaagtgtgtgtgggggggagaaaTGATTTAAATCTGCAAGTAGGGTTGCATACTTTTCTAAGAACGTCGTTGCGTTAGTGAGGAGCCAGAGAGGGAGaatctgtgtttttctgcttcAAACTGATCAATTGACACCCGTGGTTGGAGCAGTAGGAAAGGAAGTGATGCTGAAAGCATGAGTAGATGAGGACCGCGCTTGTGGAAACTTTGGCATTTTAACCAATGCAGTACCTGCCAGTCAGTGATGCTGGACGATGGCTGTGTTTATTTAGGTGGGAATGATTCCTGATGCCGGGAGAGGAGGTTCAACAGCTGGTGAAATTTGTTAAtgattagtttaaaaataaccaaccaataaaaaaacaattcagttGCACCACTCAAGACAAGCCCCCAAACCAGGTTCGTTTGGCCTGTTATTAAATGTGCACCAGTTTCTTTCAATGCCCCGTCTAAGGTACTAACTGATTCTCACTGGTACTAACATGGCACTTAAGCCGGCAGCACGCGGGAGGGAACTTTGCAAGCAATCGGGAGGCCAGACAGCACACGATGCTCATCTGGCTCAGAGGTgctcagtcctggtcctggcGGGACACTGACCCTGCTGGGGTTTGTGCCAATtgatctctcaattacttaattgaacccttaattgaagtcatttcCTACATCAcagcctttttattatttttaacggTAGGTTTAAAGTTAAGTATACAATCGTTTAAGGAAATTCTTGTCAAGGAACCAacttatcagttacacaatttaaagattcaaatgtaatcaaattattgAAATAAGCGGCTCAATTAAGTGAGAGCTCAGCAGGGTCAGTGTTCCGCCAGagttgagaaccactgaccAGGTTATGCCATCTGCCAGAGGCAGGTGTGAGAGGTGTAGCGCTCCTTCATGTCACAAGGTGGCAGGATAGCCATGTTCCTGAGAGAGGGCTTGACGAGCTCTTGGACTGCGGTTTTCAAAGCCAGAACCCCTTCTAGTGGAGCTCTCCGGGCCGGGCCTTGCCAACCTTGGCCGTGCTGTCAACTCCTGTCTTTCCTCTCTGCACCGCAGCCCATTGTTTAGAAGCGCAGATCAGACTGCAGCAGGGCTCCCAGAGGATGCAAGGTCGAGCTTATCTACTTCACAAACTGACACTGAGGAAGCCTAGCaggtattttccttttttaatgtttccaaCAGCCAAGTGGAAATGAACGCACCAGAGAATGTGCTTGGAGGATGTTCAGCAGGGTCCTTGATTATCTTCTGCCGTTCCCTGCACGAGCCTCACACACAGTCGGGGGAAGTCTCGGCCAGTTTTGCATcttgtctttatttaaaatctctGATCTGGCATTTGTTGATGCTGGTAAAACACTAAATTTGTAGTGGTGTCAAAATCTTCCCATCATCCACTTACAGTCACTCAAATATCTATTAACCTAAGTCTTGTGTAGTTCGACTGCAGTTTTGGTACTAGAATAACTCCTTGGGTGACTCTACCTTGATCAGTTATCTTGCTTGAAAAAGACCAGGCGAGGCAGTGTGTGGCTTCAGCTCTGTTGTGGCTCAGTTCATTTTGTGTCACAAGCTTTATATGATCTGTTAGCACACTTGTAATGTGAAGAAACTGCCTGAGGCCAACATGGGTGTTGTAGCCTCCTGGGTGACCGTCCACACTCACACCTGCTGCTAGATACCAGAGATGTCTGTTACGCAAGGCTGGTGGTTGAGTAATCCCAAATGTTCTCAATCCAGAATTGATTTGTGGTTCTCTAGTAAGATGCATGCACCAGGACATCACacatgcccccccccaccacgtCCCCtgtgtttaatgaaatgaatgtCAAATGTGCGGGAGATGCCCTTTTATGCAAGTTTCTGTCTGAGACGCTTTCTGTGCGAGATCCATGTTAACAGCTGAAGGAGGCTGTGTGGTGGAGGGCCTGGGTGGGGGGAGCAGCTGGTGCAGATGTGACCTTATAAACCACATACAGGTCCAACTACCGCATGGGCTTACCTGTGACCCCTGTAAGGGGCGACAGTACTGGTGAGGGGTGTTGTGTGCCCTTTCATATGACCACCCTCAGGACAATTCCCTTTGAACACTTCTCTTCTCCCTTTTATGAAGCCCCCTGTTGTTTTAAAGCTAGTCTGTAAACGGGTGCCCCAGACCTGCCAGGGATGTCCTTCCCGGGCCTTTGTTTCCTCTGCACCCTGAATGGAGGGACTGCCCATGATAAGGATGAGTTGAACTTGCCTTTGTGGAACAAGTGATTAATCGGAGGCAAGGATGAAGTCTAGTATTGATGTATAAAAATCATATACACAATTCCGAAGCACTTGCCCCTCAGCCTGTGCTTAAAGAAACCACCACGTTCACCAAAGGAAATCAGAACGTGGTTGCTCCACTTGGCTTTgattgtttagttttcttgaaGTGAAGTTAGAGACTCCACAGATCGCACTAGCCCCCCTGAGAGACTAAACCAAAGCCCCTATATGcggattaaaaactaaataaaaaagcataaagTCTTACTCATGTTTCTAAGTGTGGGTATCACTTCACAACAGCTCATTCCTTTTTTATAAATAAGGGTGGATTGATGAGTGGGGTGTGAGATGAACTCTTGAAGCATGGCTTGTTACTAACTTGTACATTTGCCAATATCTTCCCTCTGCACTGAAAACTGGGACTGTCAAACACATGATGTTTAGTAGTTTGCAAAATACAGCCTAAAATACACTGCAGGCGAAGATTAATGGATAATAATTAGAGCAGCAATGATCAAAAAGCAACATGATGGATGGGTGTGGGTTGTGGAGTTCAAATTGTGCTCATTTCTTCCAGTGTGCATGtcttgtttcatttttgttttcatttgtttccaaaTACAACTACATTACAAAGTATAACAATTATGTGAAATATGCAATTTTGAAATCTTTTCCAGATCTTTTCCAGGTCTGCTGGTTTGACcgaaatgctttattttcatctttGGGGGAGTAAATTATAAATGAGAGTTCTGCATCGACACCCAGTCGTTACGCTCTTGAAAGGGTTAGCCAGCCATCAAGGCTGGGCTTGACCTTGTGTCCTTGACCTGTATTGCATCATTGGGGCTGAGGCCTCCACTTGATCCAGGAGATCAAAACACTTTCcacccttttttcccctcccaaacaaataaactgcttGCAAAAGATCAATGTATTAAACTTCCTTGCTGACCCAAAGCTCAAGGTCTTCAACTTGGTGAactgttttaaagtgaaaatgccCCTTTCTTGATGTTTGTGGTGCGAGTGCGGCAGTGCCCTCTGCCCGAGCCGCTGCTGTAGCCCTTTCCAGGACTGCAACTTGGGATGCGTTGCAGAGAGGGTTCACTCGGGTCTCTTTACTAGCAGAGTGCTTGCGGCGGGGGTCAGACCTTTATTCTCACTTGGACTTGGTGGACAATGAATTGCCCCAAGGTGGGCAGAAACTCCAAATGCACACAACTCGAATGCGAACCCCAGCTGATCTGTGAAGGGACCTGTGTGAACACTTTTAAATTCTTTGCATACGAGATGCAGTTACTTCTGATGCTGTGACTTCACTTACTATTTCTTTATGGCAAGAGTGGTGTGCTTACTAACTGAGCCCAACCAGCCCAAGCTTGATCTTTATGCTCTATCAAAGTCTGTGTCTCTTTATTCACTGTGAAATTCGTGTAAGACGGACCTCGACTGGGTTCTTGGCCAGTGTAGGAAAGTGAGGTTGGCCATTTTGATTCTTGGTGTGATTTGAGCTTTGGTGACTGCCATATAATGCCAGTCTACGTGGCAGCATGGTGGTCCTCATACTCTGCTTTCACGTTACTGGTGTATCCTGGAGAGATGTGCTTTGGCACTTATGTAATTCACTATCCTCCCACTACAGACAGCAGCTTAATTGGCAGGTAATTCCAATGACCGCTGTGAAAACAAATCATGTGATCATTAAGGGCACTTGCATGTTTACTGCTGGCATGTGTAACTGCTGGTTCTGGCATGTTCTAGGACTTAGACAGGTCTATTAATCCTCATTGTCAATAGTAGTAGTACAGTGCTCTAACAGAATCTACAGTTAGAGGTCCATCATCTTAAGATCCAGCGATTGGCTTTTCAAAGACTTCTAAACCCGTACTGTTTTGGTGCAGGGAGGGGAAGGAGACGACGCGGCTCTGTCCTCCGGGAGATCGCCTGTCACTTTATAGTTTtggcaaaacacaaatgtaaagaaaatgctAGTTTGTAACAAAAGGGGAGGCTGTGTTTTAATGTACTGTGTAAATACATAGCTGTGGTGTTCAGTTCCTTCAGGCACCACCCCAATCCAAGGACATGTCTGCTTATTTtccagtgtgtatatattaaattatatactgTGTGCAGCACTAAGTACATATTGCATATCTTGGAGGTGGGGTGAAACTATGTGagtagataaataaaatacaaaatcagtttgttcattatttatggatgatttttttaagttatgagaatatttgtttatttgtcctatttttgttttaaaataaagttcctCAAGTCAACCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24316 lncRNA downstream 89175 52768902 ~ 52769415 (-) True G19604
TU24254 lncRNA downstream 167404 52679953 ~ 52691186 (-) True G19551
TU24251 lncRNA downstream 193408 52649008 ~ 52665182 (-) True G19548
TU24212 lncRNA downstream 310540 52547737 ~ 52548050 (-) True G19516
TU23977 lncRNA downstream 1420497 51437880 ~ 51438093 (-) True G19330
TU24389 lncRNA upstream 143459 53009878 ~ 53010218 (-) True G19663
TU24402 lncRNA upstream 339546 53205965 ~ 53215336 (-) False AMCG00017299
TU24425 lncRNA upstream 371787 53238206 ~ 53238409 (-) True G19687
TU24492 lncRNA upstream 551766 53418185 ~ 53419077 (-) True G19741
TU24529 lncRNA upstream 585699 53452118 ~ 53527652 (-) False AMCG00017313
AMCG00017281 mRNA downstream 5008 52844864 ~ 52853582 (-) True AMCG00017281
AMCG00017285 mRNA downstream 17946 52838503 ~ 52840644 (-) True AMCG00017285
AMCG00017282 mRNA downstream 37473 52818039 ~ 52821117 (-) True AMCG00017282
AMCG00017286 mRNA downstream 43745 52811847 ~ 52814845 (-) True AMCG00017286
AMCG00017283 mRNA downstream 52159 52803720 ~ 52806431 (-) True AMCG00017283
AMCG00017295 mRNA upstream 1908 52868327 ~ 52881013 (-) True AMCG00017295
AMCG00017296 mRNA upstream 18056 52884475 ~ 52900125 (-) True AMCG00017296
AMCG00017294 mRNA upstream 37921 52904340 ~ 52912643 (-) True AMCG00017294
AMCG00017293 mRNA upstream 46404 52912823 ~ 52917944 (-) True AMCG00017293
AMCG00017291 mRNA upstream 58404 52924823 ~ 52929839 (-) True AMCG00017291
TU24132 other downstream 998448 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1408804 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1408804 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1423522 51430855 ~ 51435068 (-) False AMCG00017234
TU23267 other downstream 4364241 48489127 ~ 48494349 (-) True AMCG00017158
TU24480 other upstream 516921 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 519677 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 519677 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 519677 53386096 ~ 53387709 (-) False G19730
TU24580 other upstream 809664 53676083 ~ 53728883 (-) True G19808

Expression Profile