RNA id: AMCG00017299


Basic Information

Item Value
RNA id AMCG00017299
length 1140
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00017299
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53194833 ~ 53215336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCGGGCCCTCTGTCAGTGGCTCCCCCTCCTCCGGGCTCACGCTGCGCCGCTCTTCTTTTTCTGCAGCTACGGTGATCCTGAACGAGCTGAACTGGACCCAGGCTCTGGAGAAGGTGTTCATAGAGAACCGCAACGAAGACCCGTCCCTGCTGTGGCAGGTGTTTGGCAGCGCCACCGGAGTCACCAGATACTACCCAGCCACGCCCTGGAGAGCACCCAACGGGATCGACCTGTACGACGTGCGAAGACGGCCCTGCCCCGCGGCGCTGAAACTGGAATGGATGCGGAGGGGTCCAGTTCCCTCCATTCCCACCGTCCCCATTGTCCCCACTGTCCCCTTCATCCCCACAGTCTCCACTGTCCTCTCCATCCCCACTGTCCCCTCCATCCCCACCGTCACCATTGACTTCACTAGGACTGTTTCAGGGTTTGGCTCTGAACCCGTGGAGAGTCTGCGTGTTGCTCTGAAGCACAGAAAGTCCCCTCCATCCCCACTGTCTTCACTGTCCCCACTTTCCCCTCCGTCCCCACCGACCCTTGTCTCCACCGTCTCCATCGTCCCCACCTTCTTCACTGTCCCTACTGTCCCCACAGTCCTCTTCATCCCCACTATCCCCTCCATCTCCATCGTCCCCTCAATCCCCACAATCCTCTCCATCCCCACCGTCCCCATTGTCTTTATAGTCCTGTCCATGCCCACCATCCCCTCTGTCTCCACCATCCCCATTGTCCCCACTGTCCGCTCCATCCCCACAGTCCCCACTGTCTTCACTGTCCTCACTATCCCCTCTGTCCCCACTGTCCCTTACGTCTCCACCATCTCCATCGTCCCCACTGTGCTCTCCATCTCTACCGTCCCTTCTGTCTCCATTGTCTCCGTCCCTGGTCCCTACAGACTTGAAGCACATCGGACTGAGCATTGGCGCTACGCTGGCGATGTGAGGGGATCCGTCTCTCAGGGGGGGTCCGATCACTGCCAAACTGGTCACCGCAGACAGCAGCTGCGCTCGGCTCCTAAGGGCCCCTTCGCTTCCCCTCTTATTTCCGTCTGCATCATTACCATGGGCACGGAGTTAAACGCCCTCTGCAGGGGACCAAAGGCTGTTTACACGGTTACTGACGACAGGACTGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24389 lncRNA downstream 184615 53009878 ~ 53010218 (-) True G19663
TU24316 lncRNA downstream 425418 52768902 ~ 52769415 (-) True G19604
TU24254 lncRNA downstream 503647 52679953 ~ 52691186 (-) True G19551
TU24251 lncRNA downstream 529651 52649008 ~ 52665182 (-) True G19548
TU24212 lncRNA downstream 646783 52547737 ~ 52548050 (-) True G19516
TU24425 lncRNA upstream 25687 53238206 ~ 53238409 (-) True G19687
TU24492 lncRNA upstream 205666 53418185 ~ 53419077 (-) True G19741
TU24529 lncRNA upstream 239599 53452118 ~ 53527652 (-) False AMCG00017313
TU24653 lncRNA upstream 641464 53853983 ~ 53854628 (-) True G19873
TU24655 lncRNA upstream 652391 53864910 ~ 53868777 (-) True G19875
AMCG00017291 mRNA downstream 264994 52924823 ~ 52929839 (-) True AMCG00017291
AMCG00017293 mRNA downstream 276889 52912823 ~ 52917944 (-) True AMCG00017293
AMCG00017294 mRNA downstream 282190 52904340 ~ 52912643 (-) True AMCG00017294
AMCG00017296 mRNA downstream 294708 52884475 ~ 52900125 (-) True AMCG00017296
AMCG00017295 mRNA downstream 313820 52868327 ~ 52881013 (-) True AMCG00017295
AMCG00017298 mRNA upstream 69946 53282465 ~ 53286478 (-) True AMCG00017298
AMCG00017302 mRNA upstream 126987 53339506 ~ 53343302 (-) True AMCG00017302
AMCG00017309 mRNA upstream 180189 53392708 ~ 53396408 (-) True AMCG00017309
AMCG00017310 mRNA upstream 184101 53396620 ~ 53396829 (-) True AMCG00017310
AMCG00017313 mRNA upstream 312123 53524642 ~ 53531131 (-) True AMCG00017313
TU24337 other downstream 328414 52858590 ~ 52866419 (-) False AMCG00017292
TU24132 other downstream 1334691 51856246 ~ 51860142 (-) False AMCG00017251
TU23984 other downstream 1745047 51445587 ~ 51449786 (-) True G19335
TU23985 other downstream 1745047 51445587 ~ 51449786 (-) False G19335
TU23976 other downstream 1759765 51430855 ~ 51435068 (-) False AMCG00017234
TU24480 other upstream 170821 53383340 ~ 53387709 (-) True G19730
TU24476 other upstream 173577 53386096 ~ 53387709 (-) False G19730
TU24477 other upstream 173577 53386096 ~ 53387709 (-) False G19730
TU24478 other upstream 173577 53386096 ~ 53387709 (-) False G19730
TU24580 other upstream 463564 53676083 ~ 53728883 (-) True G19808

Expression Profile