RNA id: AMCG00017318


Basic Information

Item Value
RNA id AMCG00017318
length 555
RNA type mRNA
GC content 0.63
exon number 5
gene id AMCG00017318
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53638562 ~ 53642822 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgAAAGCAGAGAAGGAGCAAGAGATGAaagcagagcgagagagagagagagagagagagagagagagacatgccacTGGCCCCGTTTTGTGGCCCCGGATGGATAGGATGAAGATAATCAAGCGGCGCCTCTCGATGTCGCTGCGCAGCACGCGGCCGGTGGACGACTCGCTGTCCGAGCTGGCTGAGCAGATCACGCTGGATGAGCCCAGCGCCACGCATGACAACGAGGTGATGGTGTGTGCCGTGCGTCCGCACCCCTCTCACAGCGCCCCGTCGTTTCTGCGCCAGTATGCGGGCTCTCTGAGTCGGGTCGCTCTGCGCAGGGACCCAGGCGGCGGCCCGCCGGACCGGCCCTACCTGGCTCTGGAGAGGACCAGCTCACTTGCGCTGTGTCCCGAGCTGCTGCGGTCCAAAGGGATGCGGAGACCTTTCAGAGAGCAATTAAGCTATTACGGCTCGGGCATCGCAAGGGGGGTAATCCGCAGTCAGCACCACTCCTGCGACTCGTGTTCTGCGGCCCTGCCCAGCGCCGGCGCTGCACAGCCCCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24529 lncRNA downstream 110910 53452118 ~ 53527652 (-) False AMCG00017313
TU24492 lncRNA downstream 219485 53418185 ~ 53419077 (-) True G19741
TU24425 lncRNA downstream 400153 53238206 ~ 53238409 (-) True G19687
TU24402 lncRNA downstream 423226 53205965 ~ 53215336 (-) False AMCG00017299
TU24389 lncRNA downstream 628344 53009878 ~ 53010218 (-) True G19663
TU24653 lncRNA upstream 211161 53853983 ~ 53854628 (-) True G19873
TU24655 lncRNA upstream 222088 53864910 ~ 53868777 (-) True G19875
TU24721 lncRNA upstream 251514 53894336 ~ 53914876 (-) True G19918
TU24723 lncRNA upstream 254002 53896824 ~ 53897452 (-) True G19920
TU24731 lncRNA upstream 261473 53904295 ~ 53949032 (-) True G19923
AMCG00017317 mRNA downstream 6115 53627074 ~ 53632447 (-) True AMCG00017317
AMCG00017315 mRNA downstream 12213 53613476 ~ 53626349 (-) True AMCG00017315
AMCG00017312 mRNA downstream 80674 53535847 ~ 53557888 (-) True AMCG00017312
AMCG00017313 mRNA downstream 107431 53524642 ~ 53531131 (-) True AMCG00017313
AMCG00017310 mRNA downstream 241733 53396620 ~ 53396829 (-) True AMCG00017310
AMCG00017316 mRNA upstream 18348 53661170 ~ 53663458 (-) True AMCG00017316
AMCG00017320 mRNA upstream 68513 53711335 ~ 53715554 (-) True AMCG00017320
AMCG00017321 mRNA upstream 94584 53737406 ~ 53781148 (-) True AMCG00017321
AMCG00017322 mRNA upstream 140004 53782826 ~ 53783724 (-) True AMCG00017322
AMCG00017329 mRNA upstream 182736 53825558 ~ 53827875 (-) True AMCG00017329
TU24480 other downstream 250853 53383340 ~ 53387709 (-) True G19730
TU24476 other downstream 250853 53386096 ~ 53387709 (-) False G19730
TU24477 other downstream 250853 53386096 ~ 53387709 (-) False G19730
TU24478 other downstream 250853 53386096 ~ 53387709 (-) False G19730
TU24337 other downstream 772143 52858590 ~ 52866419 (-) False AMCG00017292
TU24580 other upstream 33261 53676083 ~ 53728883 (-) True G19808
TU24599 other upstream 120176 53762998 ~ 53764376 (-) True G19824
TU24740 other upstream 310472 53953294 ~ 53957340 (-) False AMCG00017334
TU24763 other upstream 389817 54032639 ~ 54034161 (-) True G19950
TU24816 other upstream 474442 54117264 ~ 54154094 (-) True G19998

Expression Profile