RNA id: AMCG00017320


Basic Information

Item Value
RNA id AMCG00017320
length 765
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00017320
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53711335 ~ 53715554 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACCTGCCACAGGCTGCTGCTTCCTCCTCAGGCATGGCCTACGCCCTGCTGGCCTCAGTGCCCCCCGTGTTCGGGCTGTACTCCTCCTTCTACCCCGTCCTGGTCTACTTCATCTTTGGGACATCCCGGCACATCTCCATAGGTGAGCAGCACCTGACAGCGCGCCGCCCCGAGCAAACAGCCCCAGTGGAGCCCCCTACCTGCCCACTACTCATTCATGTGTATTGCACCTTTGCGGTGATCAGTCTCATGGTGGGCAGTGTGACTGAGCGCCTCGCTCCCAATGAGAACTTCCTCCGCAACGACACCAATGGCACTGAGGTTCTGGACCTGACCGCCAGGGACACCTACAGGGTCCAGGTTGCCGCGGCGGTCACGATCCTAGCGGGGATATTCCAGgtggtGCTGGGTCTGGTGCAGTTCGGCTTCGTGGTGACCTACCTATCCAACCCGCTGGTCAGGGGCTACACCACCGGTGCCGCGGTCAATGCTGTCATCTCCCAGCTCAAGTATATCTTCGGCCTCCACCCCCGGCGCCACAGCGGCCCTCTTTCTCTGGCCTATGTGAGTAACGGAACACTGATAGATGTGTGCTGGCTGCTGCCCCAGACCAATCTGGGCACTCTGGTGGTCAGTGTGGTGTCCCTGGTGGCTCTGATCGCAGCGAAGGAGCTCAACtgtctcccagctctgAAATGCGAGACCTCCCTGCTGCGCTGGTCCTCTCTCAGCACTCAGGACCAGGACGCGCTCGGGAGCTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24529 lncRNA downstream 183683 53452118 ~ 53527652 (-) False AMCG00017313
TU24492 lncRNA downstream 292258 53418185 ~ 53419077 (-) True G19741
TU24425 lncRNA downstream 472926 53238206 ~ 53238409 (-) True G19687
TU24402 lncRNA downstream 495999 53205965 ~ 53215336 (-) False AMCG00017299
TU24389 lncRNA downstream 701117 53009878 ~ 53010218 (-) True G19663
TU24653 lncRNA upstream 138429 53853983 ~ 53854628 (-) True G19873
TU24655 lncRNA upstream 149356 53864910 ~ 53868777 (-) True G19875
TU24721 lncRNA upstream 178782 53894336 ~ 53914876 (-) True G19918
TU24723 lncRNA upstream 181270 53896824 ~ 53897452 (-) True G19920
TU24731 lncRNA upstream 188741 53904295 ~ 53949032 (-) True G19923
AMCG00017316 mRNA downstream 47877 53661170 ~ 53663458 (-) True AMCG00017316
AMCG00017318 mRNA downstream 68513 53638562 ~ 53642822 (-) True AMCG00017318
AMCG00017317 mRNA downstream 78888 53627074 ~ 53632447 (-) True AMCG00017317
AMCG00017315 mRNA downstream 84986 53613476 ~ 53626349 (-) True AMCG00017315
AMCG00017312 mRNA downstream 153447 53535847 ~ 53557888 (-) True AMCG00017312
AMCG00017321 mRNA upstream 21852 53737406 ~ 53781148 (-) True AMCG00017321
AMCG00017322 mRNA upstream 67272 53782826 ~ 53783724 (-) True AMCG00017322
AMCG00017329 mRNA upstream 110004 53825558 ~ 53827875 (-) True AMCG00017329
AMCG00017328 mRNA upstream 120096 53835650 ~ 53851974 (-) True AMCG00017328
AMCG00017327 mRNA upstream 141542 53857096 ~ 53864544 (-) True AMCG00017327
TU24480 other downstream 323626 53383340 ~ 53387709 (-) True G19730
TU24476 other downstream 323626 53386096 ~ 53387709 (-) False G19730
TU24477 other downstream 323626 53386096 ~ 53387709 (-) False G19730
TU24478 other downstream 323626 53386096 ~ 53387709 (-) False G19730
TU24337 other downstream 844916 52858590 ~ 52866419 (-) False AMCG00017292
TU24599 other upstream 47444 53762998 ~ 53764376 (-) True G19824
TU24740 other upstream 237740 53953294 ~ 53957340 (-) False AMCG00017334
TU24763 other upstream 317085 54032639 ~ 54034161 (-) True G19950
TU24816 other upstream 401710 54117264 ~ 54154094 (-) True G19998
TU24820 other upstream 426584 54142138 ~ 54145216 (-) False AMCG00017343

Expression Profile