RNA id: AMCG00017322


Basic Information

Item Value
RNA id AMCG00017322
length 417
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00017322
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53782826 ~ 53783724 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCGGAGCTCCCAGGACCTcagtctgagtgtgtgtgtgtgcaggtggtGCTGGGTCTGGTGCAGTTCGGCTTCGTGGTGACCTACCTGTCCAACCCGCTGGTCAGGGGCTACACCACTGGTGCCGTGGTCAACGCTGTCATCTCCCAGCTCAAGTACATCTTCGGCCTCCACCCCCAGCACCACAGAGGGCCTCTTTCTCTGGTCTATaCACTGATAGATGTGTGCTGGCTGCTGCCCCAGACCAATCAGGGCACTCTGGTGGTCAGTGTGGTGTCCCTGGTGGCTCTGATCGCAGCGAAGGAGCTCAACGTCAGGCTGAGCAGAAAGCTGCCGCTGCCCATTCCTGTAGAGCTGATCATGCCTCCATGTCGTGCCAGCGTTCATGTACGCTTTCTGGCCTTGGAGTATTAA

Function

GO:

id name namespace
GO:1902358 sulfate transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24529 lncRNA downstream 255174 53452118 ~ 53527652 (-) False AMCG00017313
TU24492 lncRNA downstream 363749 53418185 ~ 53419077 (-) True G19741
TU24425 lncRNA downstream 544417 53238206 ~ 53238409 (-) True G19687
TU24402 lncRNA downstream 567490 53205965 ~ 53215336 (-) False AMCG00017299
TU24389 lncRNA downstream 772608 53009878 ~ 53010218 (-) True G19663
TU24653 lncRNA upstream 70259 53853983 ~ 53854628 (-) True G19873
TU24655 lncRNA upstream 81186 53864910 ~ 53868777 (-) True G19875
TU24721 lncRNA upstream 110612 53894336 ~ 53914876 (-) True G19918
TU24723 lncRNA upstream 113100 53896824 ~ 53897452 (-) True G19920
TU24731 lncRNA upstream 120571 53904295 ~ 53949032 (-) True G19923
AMCG00017321 mRNA downstream 1678 53737406 ~ 53781148 (-) True AMCG00017321
AMCG00017320 mRNA downstream 67272 53711335 ~ 53715554 (-) True AMCG00017320
AMCG00017316 mRNA downstream 119368 53661170 ~ 53663458 (-) True AMCG00017316
AMCG00017318 mRNA downstream 140004 53638562 ~ 53642822 (-) True AMCG00017318
AMCG00017317 mRNA downstream 150379 53627074 ~ 53632447 (-) True AMCG00017317
AMCG00017329 mRNA upstream 41834 53825558 ~ 53827875 (-) True AMCG00017329
AMCG00017328 mRNA upstream 51926 53835650 ~ 53851974 (-) True AMCG00017328
AMCG00017327 mRNA upstream 73372 53857096 ~ 53864544 (-) True AMCG00017327
AMCG00017333 mRNA upstream 100927 53884651 ~ 53890648 (-) True AMCG00017333
AMCG00017334 mRNA upstream 169696 53953420 ~ 53957473 (-) True AMCG00017334
TU24599 other downstream 18450 53762998 ~ 53764376 (-) True G19824
TU24580 other downstream 53943 53676083 ~ 53728883 (-) True G19808
TU24480 other downstream 395117 53383340 ~ 53387709 (-) True G19730
TU24740 other upstream 169570 53953294 ~ 53957340 (-) False AMCG00017334
TU24763 other upstream 248915 54032639 ~ 54034161 (-) True G19950
TU24816 other upstream 333540 54117264 ~ 54154094 (-) True G19998
TU24820 other upstream 358414 54142138 ~ 54145216 (-) False AMCG00017343
TU24923 other upstream 583060 54366784 ~ 54368016 (-) True G20064

Expression Profile