RNA id: AMCG00017327


Basic Information

Item Value
RNA id AMCG00017327
length 2203
RNA type mRNA
GC content 0.62
exon number 11
gene id AMCG00017327
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53857096 ~ 53864544 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAGTGCGGAGGATTCGGTGTTTCGGATTAGCTCCACGGTTCGGGCTCTGAGCTCCGCGCTGCGGGGCGAGGCGAGCGGTGAAGCCGACTCTGGGAGCTCCGAGTGCGGCGTGAGCAGCTCTGGCGACCCGGGGAAGCTGTGGTTTAAGGAGAGCAGCGCTAAAAACCTCCGGAACAGAGATTTCTTGGCCCCGGCGGCTGTGCTGAGGAAACTGTTCCCTGACGGACAGGTGCCGGACGCTGCGGTGCGGCGGGTGCGGGCGGTGCGGGGGGCGGCGGTGCTGCCGCTGGGGGGCTGCGAGGACGGCGCGGTGGGGCTGCGTGTTCGAGCCGATCGGCCGGCTGTGTTCCGGGGGGTCCTGCACAACACGACCCCCTACCTGGGGCAGGGAGGTGCCAAGGGCGGCGGCAGAGGCGTGGTGCTGAACTGCCCCGCCCTGCACCCGGCGCCCTCCCCGCAGCAGCTCTCTGTCGGTCAGCTCAGGACCATTCTCATCGCCGACCACCTCGGGGCGCTGTGCCGCAGACAAGGgttcagtgtgtctctgtgtccagtCCTGGAGGAAGGCAGTGACATCATCGCGTTCCTCCAGGATCTGGGAGTCGATTGGCCCACAGTGCCGGTGGGCTGGACCAATCAGGAGCGCGAGGCGGGGCTGCGGGACGCCCTGATGAACTCCCCATACAGTgagagaggtggaggggggggcagggaaGAAGAAGAGGCCGGTGgagggacggagagagagagaggcagagccACGTGGAGGATGGGAGGCAGGGAGGATGAGAAGGGAGGACAGTGGGTTCGAGTGGACTTGAAGAGGCTGGTCCGGGAGCAGAGGCTGCTGGGATACGACCCCAACCTGAGCCCCTGCCCGGTGCAGCAGGAGGGGGTGGCTCACCTGGCCCAGCTGCAGGCGGCGCTGTCAGCCTGTGAGGGGGCTGAGTGCTCAGTGCTGCATGTGTCCACCTGTCAGCAGGAGATCCggcagcagcagctgtgtgtgctgtggagGGCCGGGGGGGCCAGTGCCACGCAGACCTGGGGTGACATCATCAGGGTTATGACCTCGGCCACAGTGAGGTTTGACCTGCTGTCCACTGCGCATCACAGTCCGGTGACAGTGGACGTGGGGCCAGGGGGCTGCGTGTCGACGAAAGGGGGCCGGGGCGGCGTGTTCGTGCTCTACAACTGCGCCCGCCTCGCCACGCTGTTCAGCAGCTACGACAGGGCCAGGCAGCAGGgtCTCTACCCAGACATTCCTGATGTGTCTCAGCTGGATTTTGCGACTCTGAAGGAGGAGggGGAGTGGCTTCTGCTATTCAATTACATCATCCCCTTCCCAGAGCTGCTGGACCAATCAGGAGAGGGGCTGGAGGGAGGCAGGGGCTTGAGGGTCAGCCTGGGCACTGAGGCgGTGTGCAGGTTCCTGGTGTCCCTCAGCATGAACTTCAGCTCCTACTACAACAGAGTGCACATCCTAGGGGAGCCACTGCCTCACCTGTTCAGCCAGATGTTTTCGCGGCTCCAGCTGTTGAGCGCAGTGAGGGAGCTGTTCCACAGCGCACTGGACACTCTGCACATCCCCCCCCTGAGCCAGCTGTAGACCCCTCACCCCACAGACCCCCCGTCACTCACCACCCACACCCCCTGAAGCTCTGCCCTGCACTCACCGCCCCGGCTCTGGGGGTCCCCGGGCAGTGGGCTCGGCCCTGCGCTGCCCGAGTCGCCCTGACTGCCTCTCCGTGTGACGACAGAACTCTGTGGAGAAGCCACTGTGCTGCTCGCTATAGAGCCCCGACTCTGAACACCAGCCCTACGGAGAACGCTCGACCCTATACAAGCCCTGTAGACAATCCAACAACTGTATGCGAGCCCTGAGTCGCAGCACTGCACACAAGCCCCATGAGGCCCCAGTACTCTGCACCCCCCTGCAGAGCAGGGTCGTACTGAACGCCGGCCCCACGGGGGCCCCGCTGCTGTGCTCTTATGACTTATTTCCCcgttttatacagttttacatGGTGATAAACGGAAACATTCATTTATTCccactttatttaataaaaggaaCAGCTGCCAAGGAGGgaaacaaatattaacaaacattaaaaaacaataaaatcagtAAATGGGAGATGCTGGTGTGTTCCCTGACTCTctgactctgtctctctctgtctgtcattcCTGTG

Function

GO: NA

KEGG:

id description
K24973 DALRD3; DALR anticodon-binding domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24653 lncRNA downstream 2468 53853983 ~ 53854628 (-) True G19873
TU24529 lncRNA downstream 329444 53452118 ~ 53527652 (-) False AMCG00017313
TU24492 lncRNA downstream 438019 53418185 ~ 53419077 (-) True G19741
TU24425 lncRNA downstream 618687 53238206 ~ 53238409 (-) True G19687
TU24402 lncRNA downstream 641760 53205965 ~ 53215336 (-) False AMCG00017299
TU24655 lncRNA upstream 366 53864910 ~ 53868777 (-) True G19875
TU24721 lncRNA upstream 29792 53894336 ~ 53914876 (-) True G19918
TU24723 lncRNA upstream 32280 53896824 ~ 53897452 (-) True G19920
TU24731 lncRNA upstream 39751 53904295 ~ 53949032 (-) True G19923
TU24726 lncRNA upstream 84214 53948758 ~ 54041033 (-) False G19923
AMCG00017328 mRNA downstream 5122 53835650 ~ 53851974 (-) True AMCG00017328
AMCG00017329 mRNA downstream 29221 53825558 ~ 53827875 (-) True AMCG00017329
AMCG00017322 mRNA downstream 73372 53782826 ~ 53783724 (-) True AMCG00017322
AMCG00017321 mRNA downstream 75948 53737406 ~ 53781148 (-) True AMCG00017321
AMCG00017320 mRNA downstream 141542 53711335 ~ 53715554 (-) True AMCG00017320
AMCG00017333 mRNA upstream 20107 53884651 ~ 53890648 (-) True AMCG00017333
AMCG00017334 mRNA upstream 88876 53953420 ~ 53957473 (-) True AMCG00017334
AMCG00017332 mRNA upstream 96277 53960821 ~ 53972368 (-) True AMCG00017332
AMCG00017338 mRNA upstream 109589 53974133 ~ 53986709 (-) True AMCG00017338
AMCG00017339 mRNA upstream 131561 53996105 ~ 54008920 (-) True AMCG00017339
TU24599 other downstream 92720 53762998 ~ 53764376 (-) True G19824
TU24580 other downstream 128213 53676083 ~ 53728883 (-) True G19808
TU24476 other downstream 469387 53386096 ~ 53387709 (-) False G19730
TU24740 other upstream 88750 53953294 ~ 53957340 (-) False AMCG00017334
TU24763 other upstream 168095 54032639 ~ 54034161 (-) True G19950
TU24816 other upstream 252720 54117264 ~ 54154094 (-) True G19998
TU24820 other upstream 277594 54142138 ~ 54145216 (-) False AMCG00017343
TU24923 other upstream 502240 54366784 ~ 54368016 (-) True G20064

Expression Profile