RNA id: AMCG00017333


Basic Information

Item Value
RNA id AMCG00017333
length 1785
RNA type mRNA
GC content 0.61
exon number 14
gene id AMCG00017333
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53884651 ~ 53890648 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGATGAAGGGCTGGGGGCAGCAGTGTGCAATGGTGAAGGAGGAGGGGAGGCAGGGGGATCGGGtgactTTCTGATCCTGCCAGGGTACATCGACTTCACCGCCGACCAAGTGGACCTGACCTCGGCTCTGACCAGGCAGATCACCCTGAAGACTCCTCTGGTGTCGTCGCCCATGGATACGGTCACGGAGTCTGGAATGGCCATTGCCATGGCAGTAAGTGTGGAGGGGGCAGGGCCACTCACGGGTGGGATCGGGTTTATTCATCACAACTGTACCCCCGAGTTTCAGGCCAACGAGGTTCGCAAGGTCAAGCGGTACGAGCAGGGCTTCATCACGGACCCCGTGGTGATGAGCCCGCAGGAGCGTGTGCGTGACGTGTTTGAGGCCAAGGCGCGCCACGGCTTCTGTGGCATCCCCATCACGGACAGCGGGCAGATGGGTGGGCGGCTCGTGGGCATCATCTCCTCCCGCGACATCGACTTCCTGAAAGAGGAGGAGCACGACCTGCCGCTCAGCGAGGACCCGCGCAAGCAGCTGCTGTGTGGCGCGGCCATTGGTACGCACCGGGACGATCGCTACCGGCTGGACCTGCTCGCTCAGGCCGGCGTGGATGTGGTGGTGctgGACTCCTCTCAGGGTAACTCCATCTTCCAGATTGAGATGATCAGACACGTCAAGGAGAAGCACCCTCAGGTGCAGGTCATCGGGGGCAACGTGGTGACGGCAGCGCAGGCGAAGAACCTGATCGACGCCGGGGCGGATGCTCTGCGTGTGGGCATGGGCAGTGGCTCCATCTGCATCACACAGGAAGcgcccctgtctgtccctcctgACATAAAGCTCCACAGCCCCAAAACCCCGTCCACTGTAACAGGATACTCCATGCTGGCGTGCGGGCGGCCCCAGGCCACGGCGGTGTACAAGGTGTCGGAGTATGCGCGGCGCTTCGGCGTGCCCGTGATCGCGGACGGCGGCATCCAGACTGTGGGCCACATCGCCAAGGCCCTGGCCCTGGGTGCCTCCACCGtgaTGATGGGCTCTCTCTTGGCCGCCACCTCCGAGGCTCCAGGCGAGTATTTCTTCTCCGACGGGATCCGTCTGAAGAAGTACCGAGGCATGGGCTCGCTGGACGCCATGGACAAGAACCTGGGCTCGCAGACCCGCTACTTCAGTGAGTGTGATAAGATCAAGGTGGCCCAGGGCGTGTCGGGGGCCGTGCAGGACAAGGGGTCGATACACAAGTTCGTGCCGTACCTGCTGGCCGGCGTCCAGCACTCCTGTCAGGACATCGGGGCCAAGAGCCTCACACAGCTCAGGGCGATGATGTACTCGGGGGACCTGAAGTTCGAGAAGAGGACGGCCTCGGCTCAGGTGGAGGGAGGCGTCCACAGCCTGCACAGctACGAAAAGCGACTGTTCTAAATCTCTGTCCACGTCTTGGGAGGGGGATTagactgtgtgtgcgtgcatgtgtgtacgttggggggtgggggggtatatTTGCACAATTACCCCCCCCCCGCTCCCTCAATTGCCAAACActactccctctccctcctcctgctGCCGCCATTTCCTGTTTCCAGTCCAGTCTTCCCAGGACCTCCCAGTCCAGCCGTCaccaagagacagagagagagggagggggtgatggttaaaataaaatggtgtttTTGCAGTGCGTGTGTTTGGTGTGCGTGTCCCACAGGGAGGCGTGTGCGTGTCCGAGTGGCAGCGCAACCAAGTCCAGCCTTGAATTCCTAACtgacgtaaaaaaaa

Function

GO:

id name namespace
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00088 IMPDH, guaB; IMP dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24655 lncRNA downstream 15874 53864910 ~ 53868777 (-) True G19875
TU24653 lncRNA downstream 30023 53853983 ~ 53854628 (-) True G19873
TU24529 lncRNA downstream 356999 53452118 ~ 53527652 (-) False AMCG00017313
TU24492 lncRNA downstream 465574 53418185 ~ 53419077 (-) True G19741
TU24425 lncRNA downstream 646242 53238206 ~ 53238409 (-) True G19687
TU24721 lncRNA upstream 3688 53894336 ~ 53914876 (-) True G19918
TU24723 lncRNA upstream 6176 53896824 ~ 53897452 (-) True G19920
TU24731 lncRNA upstream 13647 53904295 ~ 53949032 (-) True G19923
TU24726 lncRNA upstream 58110 53948758 ~ 54041033 (-) False G19923
TU24727 lncRNA upstream 58110 53948758 ~ 54041033 (-) False G19923
AMCG00017327 mRNA downstream 20107 53857096 ~ 53864544 (-) True AMCG00017327
AMCG00017328 mRNA downstream 32677 53835650 ~ 53851974 (-) True AMCG00017328
AMCG00017329 mRNA downstream 56776 53825558 ~ 53827875 (-) True AMCG00017329
AMCG00017322 mRNA downstream 100927 53782826 ~ 53783724 (-) True AMCG00017322
AMCG00017321 mRNA downstream 103503 53737406 ~ 53781148 (-) True AMCG00017321
AMCG00017334 mRNA upstream 62772 53953420 ~ 53957473 (-) True AMCG00017334
AMCG00017332 mRNA upstream 70173 53960821 ~ 53972368 (-) True AMCG00017332
AMCG00017338 mRNA upstream 83485 53974133 ~ 53986709 (-) True AMCG00017338
AMCG00017339 mRNA upstream 105457 53996105 ~ 54008920 (-) True AMCG00017339
AMCG00017337 mRNA upstream 167381 54058029 ~ 54062385 (-) True AMCG00017337
TU24599 other downstream 120275 53762998 ~ 53764376 (-) True G19824
TU24580 other downstream 155768 53676083 ~ 53728883 (-) True G19808
TU24476 other downstream 496942 53386096 ~ 53387709 (-) False G19730
TU24740 other upstream 62646 53953294 ~ 53957340 (-) False AMCG00017334
TU24763 other upstream 141991 54032639 ~ 54034161 (-) True G19950
TU24816 other upstream 226616 54117264 ~ 54154094 (-) True G19998
TU24820 other upstream 251490 54142138 ~ 54145216 (-) False AMCG00017343
TU24923 other upstream 476136 54366784 ~ 54368016 (-) True G20064

Expression Profile