RNA id: AMCG00017342


Basic Information

Item Value
RNA id AMCG00017342
length 1699
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00017342
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54147224 ~ 54151848 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGACGGACAGCACGGGTTCCCAATTACTGTCCGAGTTCCCGTCGCCTTGACCAATCCGAGTTGCGCAAGTGCTCGGGGAGGCGGGTCTTCCTGCCTTCCCTTGGTTACCCGCATGGAAACGCGCTCGGTCCCAACTGTAAGCGGACACGCCGGACGGGTCGGTGCTTCTCTGTGGCAGCTCAGGCGCTTCTCCGGGAAACGAAGATGAAGATCGAGGAGGTGAAGAGCACGACGAAGACCCAGCGCATCGCTACGCACAGCCATGTGAAGGGGCTGGGGCTGGACGAGGCCGGGGCGGCGAAGCAGGCGGCGGCGGGGTTAGTGGGGCAGGAGCTCGCCAGAGAGgCCTGCGGGATCATCGTGGAACTGATCCGCTGCAAGAAGATGGCCGGGAGGGCTGTTTTACTGGCCGGACCCCCAGGAACAGGAAAGACGGCCCTGGCGCTGGCCATGGCTCAGGAGCTGGGCAACAAGGTGCCCTTCTGCCCTATGGTGGGCAGCGAGGTTTACTCCTCCGAGATCAAGAAGACTGAGGTGCTGATGGAGAACTTCAGGAGGGCCATCGGCCTGCGTATCAAGGAGACGAAGGAGGTGTATGAGGGCGAGGTGACTGAGCTGACGCCCTGCGAGACGGAGAACCCCATGGGTGGCTACGGCAAGACCATCAGCCATGTCATCATCGGCCTGCGCACAGCCAAGGGCACCAAGCAGCTCAAGCTGGACCCCAGCATCTACGAGAGTCTTCAGAAGGAGCGAGTGGAGGTGGGCGATGTCATCTACATCGAGGCCAACAGCGGGGCTGTCAAGAGGCAGGGCCGTTGCGACACCTTCGCCACGGAGTTTGACCTGGAGGCCGAGGAGTACGTCCCGCTGCCCAAAGGCGACCTCCGGTGCGAGATCAACAAGGTGGTGAACCGCTACATCGAGCAGGGCGTGGCGGAGCTGGTGCCGGGCGTGCTGTTCGTGGACGAGGTGCACATGCTGGACATCGAGTGCTTCACTTACCTGCACCGCGCCCTGGAGAGCAGCATCGCGCCCATCGTGGTGTTCGCCTCCAACCGCGGCAACTGCCTCAtccggggcaCAGAGGATATCCGCTCCCCCCATGGCATCCCCTTGGACCTGCTGGACAGAGTCATGATCGTGCGCACCATGCTGTACACCCCCCAGGAGATGAAAcagATCATTAAGATCCGAGCCCAGACAGAGGGCATCAGTATGAGTGATGAGGCTCTCAACCACCTGGGTGAGATCGGCACCAAGACCACGCTGAGGTACGCGGTGCAGCTGCTGACCCCCGCCAGCGTGCTGAGCCGCCTGCAGGGCCGCGAGGGGGTGGAGCGCGAGCAGGTTGAGGAGATCAACGAGCTGTTCTACGACGCCAAGGCCAGCGCCAAGATCCTGCAGGACCAACACGACAAGTTCATGAAGTAGAGatcacaataacacacacacacacatggaagTCTCAGCCCCCTCATCTactaccctctctctctctcgttcattctctctccctctcttgccccactccatccctctctccatccctctctcactcttcaGTCCTCTTTTTGTCCTCCATCGTGCCCCCCCACCTTTCTCCTTCACTCTGCTCATTtgttagttaaattaatttttatGTGGTTCAttctttttctaaaaaaaattaaaatataaaaaaggtttGAATAAAGC

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060420 regulation of heart growth biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006281 DNA repair biological_process
GO:0071339 MLL1 complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K04499 RUVBL1, RVB1, INO80H; RuvB-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24806 lncRNA downstream 89297 54056885 ~ 54057927 (-) True G19992
TU24770 lncRNA downstream 92125 54054836 ~ 54055099 (-) True G19957
TU24726 lncRNA downstream 106191 53948758 ~ 54041033 (-) False G19923
TU24727 lncRNA downstream 106191 53948758 ~ 54041033 (-) False G19923
TU24731 lncRNA downstream 198192 53904295 ~ 53949032 (-) True G19923
TU24926 lncRNA upstream 217904 54369752 ~ 54370666 (-) True G20066
TU24938 lncRNA upstream 300773 54452621 ~ 54454276 (-) True G20078
TU24994 lncRNA upstream 343087 54494935 ~ 54498038 (-) True G20116
TU24996 lncRNA upstream 358388 54510236 ~ 54510488 (-) True G20118
TU24982 lncRNA upstream 375936 54527784 ~ 54529197 (-) False AMCG00017358
AMCG00017343 mRNA downstream 4049 54127687 ~ 54143175 (-) True AMCG00017343
AMCG00017344 mRNA downstream 30940 54107703 ~ 54116284 (-) True AMCG00017344
AMCG00017345 mRNA downstream 50101 54095864 ~ 54097123 (-) True AMCG00017345
AMCG00017341 mRNA downstream 55627 54064369 ~ 54091597 (-) True AMCG00017341
AMCG00017337 mRNA downstream 84839 54058029 ~ 54062385 (-) True AMCG00017337
AMCG00017346 mRNA upstream 112242 54264090 ~ 54276339 (-) True AMCG00017346
AMCG00017352 mRNA upstream 165245 54317093 ~ 54323453 (-) True AMCG00017352
AMCG00017353 mRNA upstream 191553 54343401 ~ 54352579 (-) True AMCG00017353
AMCG00017358 mRNA upstream 377175 54529023 ~ 54535543 (-) True AMCG00017358
AMCG00017360 mRNA upstream 403509 54555357 ~ 54558595 (-) True AMCG00017360
TU24820 other downstream 2008 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 113063 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 189884 53953294 ~ 53957340 (-) False AMCG00017334
TU24599 other downstream 382848 53762998 ~ 53764376 (-) True G19824
TU24580 other downstream 418341 53676083 ~ 53728883 (-) True G19808
TU24923 other upstream 214936 54366784 ~ 54368016 (-) True G20064
TU25029 other upstream 493989 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 548722 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 548722 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 548722 54700570 ~ 54723791 (-) False G20193

Expression Profile