RNA id: TU24820


Basic Information

Item Value
RNA id TU24820
length 972
RNA type TUCP
GC content 0.62
exon number 5
gene id AMCG00017343
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54127687 ~ 54145216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGTCGAAAGTGCGGACGCGCGTCGGCCGGTGCAGCAGTGGCGCTGGTCCCTTTTGTTCCTCCAGTTCCTGTGTTATTGCTGCACAATGAAACGGCGCTGATTTGGGGCTTCGCAGGGGGCATCCCGGGGGCTTCCACCGCTCGTTGCTATTTTTATCGCATCCTATTGATCCGCCCGAAATCAGAGGAAGGAGCCGCCGTGAGCTGAGCGCGTCCggggctgcagtgtGACCTGTGGTCTCTGCACTCCTCGACAGCGGAAGGCAGCTCTGAAAGCGCGCAGTTTGAAGGATCTCGCCACCTgcagaacaaaccaaaaacagcaGCACCATTTTAAACGTTTTGTGGTGCTGTTTTGTAAAATTGAAACTGGTTCTGTAACGGCCGTTGGAGACGCGGACAGAGTGACAGCAGCGCTccggcaggcaggcaggcagacaggcaggcaggcaggcagacaggcaggcaggcaggcaggcaggcaggcagacagacaggcaggcaggcaggcaggctggcaCCCGGTTCACGCAGCAGTGTTGGGCTGTGCTCCTGGTGTTCAGTTActatcacagaaaacaaaaacaacacaacacgtGCTCTGCACATTTCACTTCCCGCGAAGCCCGAGCCCAGCAGTCCGATGGTAGGAGAGACAGCAGCCCAGTTCAGCTCGCCGAGGCCGATGTAAGCTTGCTCTCCTGCTGGCCCAGCCGCCCCCTCGAGCCGCGATGGGTCTGGACTTTGACGTGAAGACGTTCTGCCACAACCTGCGGGCCACCAAGCCTCCGTACGAGTGTCCCGTGGGCACGTGCCGCAAGGTGTACAAGAGCTACAGTGGCATCGAGTACCACCTGTACCACTACGACCACGACAACCCCCCCCCGGCCCAGGGCGGCACCCCCCAGCGCAAGCCCAAGAGGAAGGGCCGGCAGTCACGGGGCGGGGGCGGCGGGGGCGCGAGCGAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24806 lncRNA downstream 84211 54056885 ~ 54057927 (-) True G19992
TU24770 lncRNA downstream 87039 54054836 ~ 54055099 (-) True G19957
TU24726 lncRNA downstream 101105 53948758 ~ 54041033 (-) False G19923
TU24727 lncRNA downstream 101105 53948758 ~ 54041033 (-) False G19923
TU24731 lncRNA downstream 193106 53904295 ~ 53949032 (-) True G19923
TU24926 lncRNA upstream 224536 54369752 ~ 54370666 (-) True G20066
TU24938 lncRNA upstream 307405 54452621 ~ 54454276 (-) True G20078
TU24994 lncRNA upstream 349719 54494935 ~ 54498038 (-) True G20116
TU24996 lncRNA upstream 365020 54510236 ~ 54510488 (-) True G20118
TU24982 lncRNA upstream 382568 54527784 ~ 54529197 (-) False AMCG00017358
AMCG00017344 mRNA downstream 25854 54107703 ~ 54116284 (-) True AMCG00017344
AMCG00017345 mRNA downstream 45015 54095864 ~ 54097123 (-) True AMCG00017345
AMCG00017341 mRNA downstream 50541 54064369 ~ 54091597 (-) True AMCG00017341
AMCG00017337 mRNA downstream 79753 54058029 ~ 54062385 (-) True AMCG00017337
AMCG00017339 mRNA downstream 133218 53996105 ~ 54008920 (-) True AMCG00017339
AMCG00017342 mRNA upstream 2008 54147224 ~ 54151848 (-) True AMCG00017342
AMCG00017346 mRNA upstream 118874 54264090 ~ 54276339 (-) True AMCG00017346
AMCG00017352 mRNA upstream 171877 54317093 ~ 54323453 (-) True AMCG00017352
AMCG00017353 mRNA upstream 198185 54343401 ~ 54352579 (-) True AMCG00017353
AMCG00017358 mRNA upstream 383807 54529023 ~ 54535543 (-) True AMCG00017358
TU24763 other downstream 107977 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 184798 53953294 ~ 53957340 (-) False AMCG00017334
TU24599 other downstream 377762 53762998 ~ 53764376 (-) True G19824
TU24580 other downstream 413255 53676083 ~ 53728883 (-) True G19808
TU24478 other downstream 754429 53386096 ~ 53387709 (-) False G19730
TU24923 other upstream 221568 54366784 ~ 54368016 (-) True G20064
TU25029 other upstream 500621 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 555354 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 555354 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 555354 54700570 ~ 54723791 (-) False G20193

Expression Profile