RNA id: AMCG00017346


Basic Information

Item Value
RNA id AMCG00017346
length 1152
RNA type mRNA
GC content 0.67
exon number 3
gene id AMCG00017346
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54264090 ~ 54276339 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGTAGCTGCCGACCAGCCGCGGTGGATGACGCACCACCACCACGTTTTGAACGGACAGCACCCGGACTCTCACCACCCAGGGCTGGCCCACAACTACATGGAGCCCGCGGCGCAGCTGCTGCCCCCGGACGAGGTGGACGTGTTCTTCAACCACCTGGACTCGCAGGGCAACCCCTACTACCCCAACCCGGCGCACGCCCGGGCCCGGGTGTCCTACAGCCAGGCGCACGCTCGCCTCACCGGGAGCCAGGTCTGCCGGCCCCACCTCATCCACAGCCCGGGGATCCCGTGGCTAGACAGCGGCAAGGCAGCGCTCTCCGCTGCCCACCATCACAACGCCTGGGCGGTGAGCCACTTCTCCAAGCCCGGCCTGCACCCCGGCAGCTCCGGGGGCCCGGGGGGGCTCTCGGCGGTGTACACGGGCAGCAGCTCCGCCAGCACGGGCTCGGTGTCGTCGCTCACCCCGGCCTCGCACTCCAGTCCTCACCTCTACagcttcccccccaccccgcccaAGGACGTGTCCCCCGACCCCGGGGCCGCCTCTCCGTCCTCGGCCTCCGCCCGGCTGGACGAGAAGGAGTCCATTAAGTACCAAGTGTCTCTATCCGAGGGAATGAAGATGGAGGGCTCCAGCCCGCTGCGGACCAGCCTGGCCTCCATGGGCGCCCAGACCCCCTCCACACACCACCCCATCCCGACCTACCCCTACTCCCTGCCCTCCGCGCACGACTACGGCGGCAGCCTCTTCCACCCGGGCAGCCTGCTCGGCGGCGCCTCGTCCAGCTTCACGccgaaaatgaaaagcaaaacccGGTCGTGTTCAGGTGAGTTTGGCTCTAAAGTGTTCGGTGTTGAAGTGAACCGCCCGCTGACCATGAAGAAGGAGGGCATCCAGACGCGGAACCGCAAGATGTCCAACAAGTCCAAGAAGGGCAAGAAGGGCGGGGACGGGTTTGAGGAGCTGTCCAAGTGCATGCAGGACAAGCAGTCCCCCTTCAGCGCGGCCGCCCTGGCCGGACACATGAGCCACATGGGCCACCTGCCCCCATTCAGCCACTCCGGACACATCctgcccacccccacccccatccacCCGTCCTTCGCACACCCACACCACTCCAGCATGGTCACGGCCATGGGCTGA

Function

GO: NA

KEGG:

id description
K17894 GATA2; GATA-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24806 lncRNA downstream 206163 54056885 ~ 54057927 (-) True G19992
TU24770 lncRNA downstream 208991 54054836 ~ 54055099 (-) True G19957
TU24726 lncRNA downstream 223057 53948758 ~ 54041033 (-) False G19923
TU24727 lncRNA downstream 223057 53948758 ~ 54041033 (-) False G19923
TU24731 lncRNA downstream 315058 53904295 ~ 53949032 (-) True G19923
TU24926 lncRNA upstream 93413 54369752 ~ 54370666 (-) True G20066
TU24938 lncRNA upstream 176282 54452621 ~ 54454276 (-) True G20078
TU24994 lncRNA upstream 218596 54494935 ~ 54498038 (-) True G20116
TU24996 lncRNA upstream 233897 54510236 ~ 54510488 (-) True G20118
TU24982 lncRNA upstream 251445 54527784 ~ 54529197 (-) False AMCG00017358
AMCG00017342 mRNA downstream 112242 54147224 ~ 54151848 (-) True AMCG00017342
AMCG00017343 mRNA downstream 120915 54127687 ~ 54143175 (-) True AMCG00017343
AMCG00017344 mRNA downstream 147806 54107703 ~ 54116284 (-) True AMCG00017344
AMCG00017345 mRNA downstream 166967 54095864 ~ 54097123 (-) True AMCG00017345
AMCG00017341 mRNA downstream 172493 54064369 ~ 54091597 (-) True AMCG00017341
AMCG00017352 mRNA upstream 40754 54317093 ~ 54323453 (-) True AMCG00017352
AMCG00017353 mRNA upstream 67062 54343401 ~ 54352579 (-) True AMCG00017353
AMCG00017358 mRNA upstream 252684 54529023 ~ 54535543 (-) True AMCG00017358
AMCG00017360 mRNA upstream 279018 54555357 ~ 54558595 (-) True AMCG00017360
AMCG00017362 mRNA upstream 293932 54570271 ~ 54570558 (-) True AMCG00017362
TU24816 other downstream 109996 54117264 ~ 54154094 (-) True G19998
TU24820 other downstream 118874 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 229929 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 306750 53953294 ~ 53957340 (-) False AMCG00017334
TU24599 other downstream 499714 53762998 ~ 53764376 (-) True G19824
TU24923 other upstream 90445 54366784 ~ 54368016 (-) True G20064
TU25029 other upstream 369498 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 424231 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 424231 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 424231 54700570 ~ 54723791 (-) False G20193

Expression Profile