RNA id: AMCG00017352


Basic Information

Item Value
RNA id AMCG00017352
length 2699
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00017352
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54317093 ~ 54323453 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACGAGTGCAGGGAAGAGTGAGGCCTCGTCTCTTCAGtcattaaaaactaataattggattcaaaaaataaattaaaccgaaACAAACGCAACACATTGTGGGTCTGAAGTTGCTCTTTGACTCGGCCTGCAGTGGAGCTGAACATTAACTTAAAATACTCAAATCTGAAGCCATGCGACTCACCGCAGTTTCCTACGCCTTCACCGGCGTCCTGGCGCTCCTGCTCGGGCTGTGCCTTGCCGAGCCGTCCCTGGTGAACGAGGAGGTGAAGCGCACGGTGGACCTGAGCTCCCACCTCGCCAAGATCACGGCCGAGGTGCTGCTCTCCAACGCGGGCGGCGCGGCGGCGCACAGCTTCGTGGTGGCGGTGGAGCCGGAGCTGGCGGATCACCTCGCCTACATCGGGGTCACGgtgaagggagaggaagaggaggacagTGCTCTGGAGCTGCATGAGACCACGATTAAAGGTCAAAGCGGTAAGTTCTTCCGGGCGCAGTTCCCCTCCGCGCTGGCAGGGGGCGCCAAGCTGCGCGTGTCGGTGGAGACGGTGTTCACGCACGTGCTGCGGCCCTTCCCCTCGCAGATCACGCAGGCCGAGCGCCAGCTGGTGGTGTTCGAGGGCAACCACTTCCTGTTCTCGCCCTACGCTACCCGTGCCCAGACGACCCGCGTGCGCCTGGCCTCCAAGAACGTGGAGAGCTACAGCAAGCTGGGCGGCCCAAGCAAGAGCGACGAGGTCATCGAGTACGGGCCCTTCCGCGACACCGCGCCCTTCAGCAAGGACCCCATGAAGATCCACTACGAGAACAACTCGCCCTTTCTGACGATCAGCAGCATCACGCGCACCGTGGAGGTGTCCCACTGGGGCAACATCGCCGTGGAGGAGACCATCGACCTGCGGCACACAGGCGCCGAACTGCGCGGCCCGTTCTCCCGCTACGACTACCAGCGCCAGTCTGAGAGTGGCATCTCCTCTGTCAAGTCGTTCAAGacaaTCCTGCCGGCGGCGGCGCAGGACGTTTACTACCGCGACGAGATCGGGAACATCTCCACGTCCCACCTGCAGGTGCTGGAGGACTCCGTGGAAGTGGAGATCCGGCCGCGCTTCCCACTGTTCGGGGGCTGGAAGACGCATTACATCATCGGCTACAACCTGCCCAGCTACGAGTACCTGTACACGCTGGgcgATCAATACGCTCTGAAGATGCGTCTGGTTGACCACGTGTTTGATGACCAGGTGATCGACACCCTGACCGTCAAGCTCATCCTGCCAGAGGGGGCCAGgaGCATCCACGTCGAGGCCCCGTACCCCATCGAGCGCGAGCCGGACCAGCTGCACTACACCTACCTGGACACCTTCGGCCGGCCCGTCGTAGTGGCGACCAAGAACAACCTGGTGGAGCAGCACATCCAGGACATGgtggtCCACTACAACTTCAATAAGATCCTGATGCTGCAGGAGCCTCTGCTGGTCGTGGGTGCCTTCTACATCCTGTTCTTCACAGTCATCGTCTACGTGCGCCTGGACTTCTCCATCACCAAGGACCCGGTGGCCGAGGTGCGCATGAAGGTGGCGTCGCTGACAGAGCAGGTGCTGACGCTGGTGAACCGGCGGCTGGGCGTGTACCGGCACTGCGACGAGGCTGTGTCCGAGATCCAGAAGCTGGACGGGCAGGTGAAGGAGCTGGCGTGGCGCGCCGTGCAGGAGGCCGAGCGGCTGGTGGGTGGGAAGCTGAAGAAGGAGGCGTACCTGGAGAGCGAGCGGCAGCTGTCCTCGCGCCGGCAGGAGCTGGTGGCCCGGATCGACACCCTGCTGGACGTGCTGTAGGCCCGCTGCACAACTCTCGATACACAGACCACACACGGCAAATACCATACAGACTACAGCACACGCAAAAGAGAAcacatgcaacacacacacacacacacacacacacacctcagccCAGGCCAGGTGAACTCAGCCTGCCAGCCCCCCCACACTGTTGGCCCCagtcaattaagaaattaaacatgttaattGGAGAGAGACCCTGTCACTGACCTGCCTTACACACCTGTGGCCAACTGCCAGCTGTCCGTGGCGGAGGATGTGGGGTCCGGGGTGGGGGGCCGTGCCTCTGGTCAGGAGGCGCTTGGTTTTAAgcgtttgtttttgtaaactgCGTTTTGCTGCAGTCGCGTGGTTTCGGCTTTCAatgcgatttttttttttttttttNNNNNNNNNNCCAGTCCCGCGCTCCCCTCTGTTCTCCAGATCACAGCACCGACCgctgctccctccccctcctctcctcatcTTACAGCTTATATAGGATGAGCTGCAGATActctaaaataaatcaatgcttttctttttttgggctGCATCCCCCGCCCCACTGCCTCCCTCGGGCTCGGAGCCGCGGCAGAGCTCAGTCCAGCCGAGTCCGTCAGCGGGGAGGGGTGCCACCTGATCCCCCTAAACAAGTCACTTTGAGACATTTTTAttctaaactttttttgttttaagtttggtAGTAGTTAGAGATTGGAGTGACAGTTGGGaggtctgtttgtctgtctgtaagTGCCCTGTCATGACTCctcttgattgtttttgtttatttgtatgaagCCGCACTGGGCCGAGAGCACCAGACAGAGATtagtggggggggcgggggtctCCTGCAGCAGTACAGGGTTcag

Function

GO: NA

KEGG:

id description
K12666 OST1, RPN1; oligosaccharyltransferase complex subunit alpha (ribophorin I)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24806 lncRNA downstream 259166 54056885 ~ 54057927 (-) True G19992
TU24770 lncRNA downstream 261994 54054836 ~ 54055099 (-) True G19957
TU24726 lncRNA downstream 276060 53948758 ~ 54041033 (-) False G19923
TU24727 lncRNA downstream 276060 53948758 ~ 54041033 (-) False G19923
TU24731 lncRNA downstream 368061 53904295 ~ 53949032 (-) True G19923
TU24926 lncRNA upstream 46299 54369752 ~ 54370666 (-) True G20066
TU24938 lncRNA upstream 129168 54452621 ~ 54454276 (-) True G20078
TU24994 lncRNA upstream 171482 54494935 ~ 54498038 (-) True G20116
TU24996 lncRNA upstream 186783 54510236 ~ 54510488 (-) True G20118
TU24982 lncRNA upstream 204331 54527784 ~ 54529197 (-) False AMCG00017358
AMCG00017346 mRNA downstream 40754 54264090 ~ 54276339 (-) True AMCG00017346
AMCG00017342 mRNA downstream 165245 54147224 ~ 54151848 (-) True AMCG00017342
AMCG00017343 mRNA downstream 173918 54127687 ~ 54143175 (-) True AMCG00017343
AMCG00017344 mRNA downstream 200809 54107703 ~ 54116284 (-) True AMCG00017344
AMCG00017345 mRNA downstream 219970 54095864 ~ 54097123 (-) True AMCG00017345
AMCG00017353 mRNA upstream 19948 54343401 ~ 54352579 (-) True AMCG00017353
AMCG00017358 mRNA upstream 205570 54529023 ~ 54535543 (-) True AMCG00017358
AMCG00017360 mRNA upstream 231904 54555357 ~ 54558595 (-) True AMCG00017360
AMCG00017362 mRNA upstream 246818 54570271 ~ 54570558 (-) True AMCG00017362
AMCG00017359 mRNA upstream 248972 54572425 ~ 54578093 (-) True AMCG00017359
TU24816 other downstream 162999 54117264 ~ 54154094 (-) True G19998
TU24820 other downstream 171877 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 282932 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 359753 53953294 ~ 53957340 (-) False AMCG00017334
TU24599 other downstream 552717 53762998 ~ 53764376 (-) True G19824
TU24923 other upstream 43331 54366784 ~ 54368016 (-) True G20064
TU25029 other upstream 322384 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 377117 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 377117 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 377117 54700570 ~ 54723791 (-) False G20193

Expression Profile