RNA id: AMCG00017353


Basic Information

Item Value
RNA id AMCG00017353
length 2277
RNA type mRNA
GC content 0.63
exon number 14
gene id AMCG00017353
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54343401 ~ 54352579 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CacaactttaaaacacaattatacacaTGCATGTCCCCCCTCACAACGCTCAATATGGTGCATTACTTAATTTCACCGTAGAGAGCGGATCTGTGCCCTGGCCACCCCTCCAGGCGGCCAATGGTACAGCCAGTAATGGATGCTGCTTTCTGGAGagtgCCAGTATGAGCGAGCTGAAGGACTGCCCCCCCCTGCAGTACTATGACTTCAAGCCGGTGGAGCATGGCAAGGTGTGCCCACGGTACACGGCGGTGCTGGGCCGCGCCGAGGACGACGGCATCGGCATCGAGGAGTGCCCGCCCTGGGGAAGCACTACTCGCAGCGCTGGGCTCAGGAGGACCTGCTGGAGGAGCAGAGAGACGGCGCACGCTCCAACGACAAGAAGAAGGGCATCATGGGCCCTCTGTCCGAGTTGGATGCcaaggGAGAATATTATCTCCCCGATGGAGGACTCTCCGATCCCAGAGGTCCCTGGGAAGGATGGAGGGACCGACGGAGCCAGCACCTCCCCCCGCAGCCAGGGCAAGGCCTTCAGcgTGCCGCACACTCGCTCTCTGGAGTCGCGGATCAAGGAGGAGCTGGTGTCTCAGGGGCTGCTGGAGGCGGAGGAGCGTGGGGGGCCAGGGGGGCCGGGCGGCGACTACAACGAGGTGATGGAGGCGTTCCGGCGCATCATGGCGGCACGGCAGAAGAAGCGCACGCCCACcaagaaggagaaggagcagGCGTGGAGAGCACTGAGAGAGCGGGAGAGCATCCTCAAACTCCTGGACGgcgGTGACATCATTCCCCGGAACGTGGCCGGTGGAATGCAGAACTCTCAGCCTGCACGATCACACTCAGAAGGGTTTttcaggggggagggggatttTGTTCAATTGTTCTACAAGGCGCTGGTGTTGGTACCCAAAACGCAGGCAGCCGTGAGAAGAGAGCGTTTGGTACACGATTCCACAATCACAAAAGCGCCGCGCTCTAGGGTGTTTCAAAACCCGCAGGCTCCGGACTCGGGGGCGGGAGCTGTGCCGGGACAGGACAACTCGATGACACGGAGACGCAGGCTGGGGCTCAGTTCGGAGTGGAGTCGGAGAGGCTCGGAGTCAGTGTCGACCCGGCGGCTCTCAGCCCAACTACCCGTCAGCGTGGTCCGCTCTGTGGCTGTGGGCTCCAGAGCGGCAATGTGTGGGCGGACGGCCTGCACTCTGGCCCCAGACGAGCTGAGCCGGGCCTCATGGTACCGGGACCGGTCAGGTCGGCGCCGTAGGCCCCAGTGGAGGGAGGGGGACGCGGAGAAGTACCGGCCCTCCTACAACCGGAGCCCTCAGTCCCTCGGCCCCGTGCTGCTCTCACACCGGCACTTCAATAAGgaCGCCCCAGTGGATGAGTGTGTGCTGGCGCTGATGCGCTGGGGTCTGGTTCCTGCCTGGTTCCGCGACAGCGACCCGAAGGCACTGCAGTTCAGCACCAGCAACTGCCGCAGCGAGAGCATCCTGCAGAAGAAATCGTACAAGGAGCCGCTGCTGCAGGGCAGGCGCTGCGTCGTCCTGGTGGACGGATTCTACGAGTGGCGTCGGCAGGAGAAGGACAAGCAGCCCTTCTTCATCTACTTCCCCCAGAGCCCCCCAGGGCTGGACCCTGCAGCCCCCAAGCCTCCGAGCTGCCCACACCTCCTGGACCAGggtGAGGAGGGCGAGGGCAGCGAGTGGACAGGCTGGAAGCTGCTAACGGTGGCTGGGCTGTTTGACCGCTGGTCGCCCCCCGGAGGTGGGGAGGACCTCTACAGCTACACTGTCCTCACCGTGGAGGCCTCCCCCAGCCTGCAGGGCATTCACGACCGGATGCCGGCAGTGCTGGACGGGGAGGACGCAGTGCAGCGCTGGCTGGACTTCGGGGAGGTTCGGCCGCTGGACGCCCTTACGCTGCTGCGCCCCACGGATTGCCTGACCTTTCACCCTGTCTCTGCGCTTGTCAACAACTCCCGCAACAACTCACCAACTTGTCTGCAGCCGAGCcagACCCCCCCTCCTTCAGCCAGCAGTAAGATGATGAGGAACTGGTTGAGCGCCGCCCCCCTGCAGAAGAGGAAGGCGCCGGAGACCCCAGAGGAGCAGGGGGGGGTGGAAGTGTTAGGCCGGGGTGGGGCCAGGAGTGGGATATTAAAATGGGTCACCAGGACCGACCCAAATAAGAAACCCAGGACTGGGTGacaaagagggagggagggaggaaaagagggggaggggcaCTGTTCCAGAAGCCAATAAAGTTGATTGACAG

Function

GO:

id name namespace
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24806 lncRNA downstream 285474 54056885 ~ 54057927 (-) True G19992
TU24770 lncRNA downstream 288302 54054836 ~ 54055099 (-) True G19957
TU24726 lncRNA downstream 302368 53948758 ~ 54041033 (-) False G19923
TU24727 lncRNA downstream 302368 53948758 ~ 54041033 (-) False G19923
TU24731 lncRNA downstream 394369 53904295 ~ 53949032 (-) True G19923
TU24926 lncRNA upstream 17173 54369752 ~ 54370666 (-) True G20066
TU24938 lncRNA upstream 100042 54452621 ~ 54454276 (-) True G20078
TU24994 lncRNA upstream 142356 54494935 ~ 54498038 (-) True G20116
TU24996 lncRNA upstream 157657 54510236 ~ 54510488 (-) True G20118
TU24982 lncRNA upstream 175205 54527784 ~ 54529197 (-) False AMCG00017358
AMCG00017352 mRNA downstream 19948 54317093 ~ 54323453 (-) True AMCG00017352
AMCG00017346 mRNA downstream 67062 54264090 ~ 54276339 (-) True AMCG00017346
AMCG00017342 mRNA downstream 191553 54147224 ~ 54151848 (-) True AMCG00017342
AMCG00017343 mRNA downstream 200226 54127687 ~ 54143175 (-) True AMCG00017343
AMCG00017344 mRNA downstream 227117 54107703 ~ 54116284 (-) True AMCG00017344
AMCG00017358 mRNA upstream 176444 54529023 ~ 54535543 (-) True AMCG00017358
AMCG00017360 mRNA upstream 202778 54555357 ~ 54558595 (-) True AMCG00017360
AMCG00017362 mRNA upstream 217692 54570271 ~ 54570558 (-) True AMCG00017362
AMCG00017359 mRNA upstream 219846 54572425 ~ 54578093 (-) True AMCG00017359
AMCG00017365 mRNA upstream 227491 54580070 ~ 54587525 (-) True AMCG00017365
TU24816 other downstream 189307 54117264 ~ 54154094 (-) True G19998
TU24820 other downstream 198185 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 309240 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 386061 53953294 ~ 53957340 (-) False AMCG00017334
TU24599 other downstream 579025 53762998 ~ 53764376 (-) True G19824
TU24923 other upstream 14205 54366784 ~ 54368016 (-) True G20064
TU25029 other upstream 293258 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 347991 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 347991 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 347991 54700570 ~ 54723791 (-) False G20193

Expression Profile