RNA id: TU24982


Basic Information

Item Value
RNA id TU24982
length 1414
lncRNA type sense_over
GC content 0.52
exon number 1
gene id AMCG00017358
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54527784 ~ 54535543 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGGCGAGGGCTGCCCCCTGGTGGACGTGCGCATGATCGACTTCGCTCACACCACCTGCAGACACTACGGGGACGCCAGCGTGGTGCACGAGGGCCAGGACAGCGGCTACATCTTCGGCCTGCAGAACCTCATCGCCATCGTCAAGGAGCTGGAGGACGACAGCGGGGACTAGGGGGGGGACACAGCCGCGCCCTGGCGCCGCCCCCACACGCCACTCTCCTCTCCCCACCATCCCCCCTTTCTGTCCTTGGAAAGAGAAACTGAATCTGATCAGACTGAGGAGACGGACCAGAAACTCCCGAGGGAGGGACACCAGGGGACGAGGGCTGAATCGATAAACGAGGGTGAAGGGAGAGGGTGGTGCCGTGTGTAGGGGCCACGGCACGCCTGTCTGAGGTGGGGTTTCTGCCCACGAGCAACTGTGTagcgttttttgttgttgtgtatgTGCGTGAGTGCATGCGTGTAAAGGAGAGACCGAGAGGACAGAAGGGAGAGCAGAGCCTTGCCTTctctctattttctttttttgaactGCTCAGCTCTTAATCCTTACcaccttctctctccctctctctctctttacaaaAGCCTtgcgtttgtttttgttttgttttttaaacaagagaAACCCACGAACTGAACTGAAAGCTAAACACTCAGGCTACACAGAGGCAGACCTAATGTGCCCCTCCAAGCCTCCCCTACCCCAAAAAACAGGCCTCCGCGAGCTCTGCAGGTCATGGGACCGTGCGGAGACTTCAGCTGGGGTCTTCAAGGGAGTCCCCTGGGCCGGGCGGGACAGTCTGCCTGTCAGTCGTCTGTGACTGGGACACAACTGGGACTTATGCGTGTTGTGTGACTCCCTCCCttctgtgctctctctctctgtgagcctccctctctcactcccccgTCCCCAGGAGAGggcggggagagggagaggggctgtGTCTGCAGGAGGAAGAGACACTTTATCCTGAACATCGAAGAAGAGACGGGGAggaaagagggacagagaggaggaCAGTGCCTGCAGTCCGCTAGTGCCCTGCTCTCTCCACCCAccgtctctctcctctctccctccctgcgtGGGGGGGCAGCACACTCACCGGAGGAGGAGTGAGGACGGACATGGAGACCCTGCCCAACTGTCTGTGCGACGAGAGAGAAATATAAGAATTTAAAAAGATATTGACAGAGACTATATagaaatttatttatttgaaatatttctttaaaaaaaaaatactaaaaatgaaaaaaaaaggacagataATGGAAGACAAACAGAAGAAACTAcattccatattattattaatgttataataatatttataattgttaatATTTGACAATTTCAGATACCTCTCTATCTTATATTCCTGTGTGTAAAGTCGTATGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24996 lncRNA downstream 17296 54510236 ~ 54510488 (-) True G20118
TU24994 lncRNA downstream 29746 54494935 ~ 54498038 (-) True G20116
TU24938 lncRNA downstream 73508 54452621 ~ 54454276 (-) True G20078
TU24926 lncRNA downstream 157118 54369752 ~ 54370666 (-) True G20066
TU24806 lncRNA downstream 469857 54056885 ~ 54057927 (-) True G19992
TU25000 lncRNA upstream 50068 54579265 ~ 54579718 (-) True G20122
TU25009 lncRNA upstream 78166 54607363 ~ 54607614 (-) True G20131
TU25015 lncRNA upstream 86049 54615246 ~ 54615450 (-) True G20137
AMCG00017353 mRNA downstream 175205 54343401 ~ 54352579 (-) True AMCG00017353
AMCG00017352 mRNA downstream 204331 54317093 ~ 54323453 (-) True AMCG00017352
AMCG00017346 mRNA downstream 251445 54264090 ~ 54276339 (-) True AMCG00017346
AMCG00017342 mRNA downstream 375936 54147224 ~ 54151848 (-) True AMCG00017342
AMCG00017343 mRNA downstream 384609 54127687 ~ 54143175 (-) True AMCG00017343
AMCG00017360 mRNA upstream 26160 54555357 ~ 54558595 (-) True AMCG00017360
AMCG00017362 mRNA upstream 41074 54570271 ~ 54570558 (-) True AMCG00017362
AMCG00017359 mRNA upstream 43228 54572425 ~ 54578093 (-) True AMCG00017359
AMCG00017365 mRNA upstream 50873 54580070 ~ 54587525 (-) True AMCG00017365
AMCG00017368 mRNA upstream 59862 54589059 ~ 54595357 (-) True AMCG00017368
TU24923 other downstream 159768 54366784 ~ 54368016 (-) True G20064
TU24816 other downstream 373690 54117264 ~ 54154094 (-) True G19998
TU24820 other downstream 382568 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 493623 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 570444 53953294 ~ 53957340 (-) False AMCG00017334
TU25029 other upstream 116640 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 171373 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 171373 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 171373 54700570 ~ 54723791 (-) False G20193
TU25136 other upstream 307900 54837097 ~ 54838491 (-) True G20237

Expression Profile