RNA id: AMCG00017360


Basic Information

Item Value
RNA id AMCG00017360
length 831
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00017360
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54555357 ~ 54558595 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTTCCTCTGATTTAACACCccccccctcttctctctctcccacagctCCCCCCATCAGCAGATTTAATCGGAGAGTGTCAGTGTGTGCTGAGGCCTTTAACCCTgacgaggaggaggacgacACGGAGCCGCGGGTCGTTCACCCCAAAACAGATGAGCAGCGCTGCCGCCTGCAGGAGGCCTGTCGTGACATCCTGCTTTTCAAAACTCTGGACCAGGAGCAGATGTCCCAGGTCCTTGATGCCATGTTTGAGCACCGAGTCCAGGCGAAGGACCATGTCATCAACCAGGGGGACGACGGGGACAACTTCTATGTCATagagaggggggTGTTTGACATCGTGGTGGAGCGGGGGGGACAGGCCCTGTGTGTGGGGAAGTACGATAACAAGGGCAGCTTTGGTGAACTGGCGCTGATGTACAACACCCCCCGCGCTGCCACCATCATCGCCACCAATGAGGGGGCGCTGTGGGGCCTGGACCGTGTGACCTTCCGGCGACTGGTACTGAAGAACAACGCCAAGAAGAGGAAGATGTACGAGATCTTCATAGAGTCCGTGCCTCTGCTCAAGTCCCTGGAGCTGTCTGAGAGGATGAAGATTGTCGATGTCATAGGAGTGAAGATGTACCACGACGGGGAGCGCATCATCACACAGGGTGACAAAGCTGACTGTTTCTACATCGTGGAGTCGGGGGAGGTGAGGATAATGATGAAGAGCAAGacaaAGGCGGCGCAACAGGACAACTCAGAGGTCGAGATTGCTCGGTGCACCCGGGGGCAGTATTTTGGGGAGCTGGCCCTTGTCACCAACAAGCCTCGTTTctaa

Function

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0005515 protein binding molecular_function
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24982 lncRNA downstream 26160 54527784 ~ 54529197 (-) False AMCG00017358
TU24996 lncRNA downstream 44869 54510236 ~ 54510488 (-) True G20118
TU24994 lncRNA downstream 57319 54494935 ~ 54498038 (-) True G20116
TU24938 lncRNA downstream 101081 54452621 ~ 54454276 (-) True G20078
TU24926 lncRNA downstream 184691 54369752 ~ 54370666 (-) True G20066
TU25000 lncRNA upstream 20670 54579265 ~ 54579718 (-) True G20122
TU25009 lncRNA upstream 48768 54607363 ~ 54607614 (-) True G20131
TU25015 lncRNA upstream 56651 54615246 ~ 54615450 (-) True G20137
AMCG00017358 mRNA downstream 19814 54529023 ~ 54535543 (-) True AMCG00017358
AMCG00017353 mRNA downstream 202778 54343401 ~ 54352579 (-) True AMCG00017353
AMCG00017352 mRNA downstream 231904 54317093 ~ 54323453 (-) True AMCG00017352
AMCG00017346 mRNA downstream 279018 54264090 ~ 54276339 (-) True AMCG00017346
AMCG00017342 mRNA downstream 403509 54147224 ~ 54151848 (-) True AMCG00017342
AMCG00017362 mRNA upstream 11676 54570271 ~ 54570558 (-) True AMCG00017362
AMCG00017359 mRNA upstream 13830 54572425 ~ 54578093 (-) True AMCG00017359
AMCG00017365 mRNA upstream 21475 54580070 ~ 54587525 (-) True AMCG00017365
AMCG00017368 mRNA upstream 30464 54589059 ~ 54595357 (-) True AMCG00017368
AMCG00017366 mRNA upstream 79828 54638423 ~ 54647934 (-) True AMCG00017366
TU24923 other downstream 187341 54366784 ~ 54368016 (-) True G20064
TU24816 other downstream 401263 54117264 ~ 54154094 (-) True G19998
TU24820 other downstream 410141 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 521196 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 598017 53953294 ~ 53957340 (-) False AMCG00017334
TU25029 other upstream 87242 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 141975 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 141975 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 141975 54700570 ~ 54723791 (-) False G20193
TU25136 other upstream 278502 54837097 ~ 54838491 (-) True G20237

Expression Profile