RNA id: AMCG00017364


Basic Information

Item Value
RNA id AMCG00017364
length 1236
RNA type mRNA
GC content 0.65
exon number 7
gene id AMCG00017364
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54666880 ~ 54673342 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGACTCGGAGGGCGGTGCTGTGAGGTGCTGTCTCCCCCTGCTGGCTGCATGCTGCGACTGCTGGGGCCAGTTGGTGTGAGAAGTGGGATGTCCCAGCATGCCGTGCTctggACAGAGACAAGCAAGGGTCATTGGACAGGGGTGATGGGGGGGCGGGTGTGGACATTGACCCAGACGGCGGACAGGCTGTGGTTCCACCGCTACAGTACCCAGCCAGGCCCGAGGGAGGGGTCGGAGGTCGTGACCCCTGAGcatgaggaggaagaggatggGAAGGACGAAGAAGCTCTGAGGGATTACTTCCAGTTGAAGGTGCAGCTGGGGGGGCTGTACCAAGGTGCCTGCCACATCCTGGATATGAAGGGCCCTGATTGGCTGGCCTCCCTGAGGGGCGTGGCCTACCCAGAAGCACGGTCTGCGCTGTGCGCACTGCCAGGGGTTGGACTCAAGGTGGCGGACTGCGTGTGCCTGATGTCGCTGGACAAACTGGGCGTGGTGCCAGTGGACACCCACGTGTGGCAGATCGCCCGCCGGCACTACCTCCCAGAGCTGGGCTCGGCGCAGCGCAGCCTCACACCCGCACTGAACCAGCGCATCGAGAAGACGATCGCCATGTTCTCACTAGTGAAGATTGTAGTCTGGATCCTGGCGGTTTTAACAGTGAGCTCTCCGGTGCACCGTGGACCCTCGGGCTGCCCTGCCTGGAGGAGATGTGCCTTGTTGGGCCTCAGTGGGCCCTCGCCACCCGGCTGCCCCACCGCTCCTAAGCGCCTGCCTCGGCTCCGCTGTGGCTGTGTTATTGTTGCTCTGGCGGGCCGCTGCTGCTCTGCCACTCGCTCTGCCGCATCACACAGCCTCCCGGCGCTGGCCGGCACGGACACCGGACACGATAGACTGGAGGATCTGCCCTGGATCATCCGCCCCACCTGGGCTTCCCAGCACCGCCCTGCCCTCTCGAATCCCAACTCACTGCACTCTGCCCCCGCTGCGTCTCGTGGCCTCACCCCACTGTATCGCCCCCCGGTCCCCTGCTGCTTTACCACCCTGCCCTCTGTGCTGGAGGCTCCTACAGGCCGAGCCTCTGGCACCGCTGGGCTCTGTGTGGCTCGGGAGGAGAGGGGCCTCCATACATCCCCCCCCGGCTCATCGCATCTCTCAGCCTCTCCTCAAGCTGCTCACCCAGTGCCTGACCCCACCCTTGCTGCCTCACCCACACTGTCTCCCCACTCCTGA

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process

KEGG:

id description
K03660 OGG1; N-glycosylase/DNA lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25014 lncRNA upstream 51432 54615241 ~ 54615448 (+) True G20136
TU24949 lncRNA upstream 84481 54579081 ~ 54582399 (+) False G20085
TU24951 lncRNA upstream 111555 54552140 ~ 54555325 (+) True G20086
TU24878 lncRNA upstream 222877 54442538 ~ 54444003 (+) False AMCG00017357
TU24855 lncRNA upstream 321103 54343402 ~ 54345777 (+) True G20028
TU25057 lncRNA downstream 59678 54733020 ~ 54737869 (+) True G20177
TU25112 lncRNA downstream 122154 54795496 ~ 54797145 (+) True G20218
TU25126 lncRNA downstream 169634 54842976 ~ 54844239 (+) False AMCG00017369
AMCG00017363 mRNA upstream 34308 54630638 ~ 54632572 (+) True AMCG00017363
AMCG00017361 mRNA upstream 171621 54493577 ~ 54495259 (+) True AMCG00017361
AMCG00017355 mRNA upstream 197745 54461909 ~ 54469135 (+) True AMCG00017355
AMCG00017357 mRNA upstream 214826 54423553 ~ 54452054 (+) True AMCG00017357
AMCG00017356 mRNA upstream 244248 54389332 ~ 54422632 (+) True AMCG00017356
AMCG00017383 mRNA downstream 15581 54688923 ~ 54690827 (+) True AMCG00017383
AMCG00017381 mRNA downstream 135124 54808466 ~ 54808810 (+) False AMCG00017381
AMCG00017370 mRNA downstream 147794 54821136 ~ 54826385 (+) True AMCG00017370
AMCG00017382 mRNA downstream 163395 54836737 ~ 54837616 (+) True AMCG00017382
AMCG00017369 mRNA downstream 169598 54842940 ~ 54846281 (+) True AMCG00017369
TU25035 other upstream 2354 54663311 ~ 54664526 (+) True G20156
TU24950 other upstream 84481 54573474 ~ 54582399 (+) True G20085
TU24970 other upstream 137676 54527752 ~ 54529204 (+) True G20099
TU24839 other upstream 348667 54307795 ~ 54318213 (+) False G20013
TU24774 other upstream 600693 54064358 ~ 54066187 (+) True G19961
TU25114 other downstream 135144 54808486 ~ 54809106 (+) True AMCG00017381

Expression Profile