RNA id: AMCG00017366


Basic Information

Item Value
RNA id AMCG00017366
length 4133
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00017366
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54638423 ~ 54651864 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAACATTAAAAACTCTTTTCAAGCCGCACACTGCAGAAGCTACGCAGTGTGTCCAGGGGCTACACGTGAAAACGCCAGGCTGTGCGCGCCCAGGTGAGTGCCGCGGAGAGCTGGTGTTTCGTGGCTCCGGCCCGGGGATCGAGAACGCGCCCGGCTCGCTCCCGGACAGTGTCGCCCCCCTTACCAGTCCACGGGCACGCGTGTTTGGGCACCgcggggaggggagggagagggcggTGCGATCCGACGGCTGCGCTCTCCGAGGCGGCAGTCGACAGCCAGGACAGCCCGGGGACTCGCCGTGTCAGAGCAGGCCGCGCACGGTCGGCTCGGTTGGCGATTCTTTTGTCTATCGCTCCCCGACCTCCGTGTGTTGCGTTGCGAGCCTTATCGGTGTGCCGGCACAGGCGCCACACACCCCGCCCGGAATCCGTGTTTTCTCCTGGAGATCCCCGAGCGGGAGGAGCGGACGGGCGGCCATGAACAACTCTCTGGAGAACACGATCTCGTTCGAGGAGTACGTGCGGCTCAAGGCGCGCAGCGTGCCCCAGCACCGCATGAAGGAGTTCCTGGAGTCGCTGGCCAGCAAGGGACCCGAGGCCCTGCAGGAGTTCCAGCAGAGTGCCACCACCATGGTGTACCAGCAGGGTGCCAACTGCATCTACACCGACAGCACCGAGGTGGCCGGGTCGCTGCTGGAGCTGGCCTGTCCGgtgcaggtgcaggtgcagcagtccccccagcagcagcaggtgacGGCAGCCCAGCTCTCCCCCCAGCTGGCAGCCGCGGTGCATCAGGCCTCAGAGCAGCAGATACAAGTGCAGgTACAGATCCAGGGCCAGCAGCAGGGACAGGGGGCTGTGCAGGTGCTGCAGGCCCCCAGCcccacacagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcaacagcagcagcagcaacagcagcagcagcaacagcagcagcaacaacaacagcagctctCCAGCTCGCAGCTCCAGGCAGTGGCTGCAGCTGCGCAGTTAGCTGTGCAGCATGGGGAGATTTCTgaggagcagctgcagcagcaccagcagcagcagcagcaggggggCCAGCAGGGCGGGCAGCAGGGCTCTCCGCGGGACGGGGAGCGGCGGGGCAGCACGGGCGGGGTCCTGCAGCCGGCCAAGAAGCGCAAGGTGGACATGCCCATCACGGTGTCCTACGCCATCCCCGGGCAGCCCGTGGCCACTGTGCTGGCCATCCCCCAGGGGCAGCAACAGAGCTACCTTTCGCTGCGGCCGGACCTGCTGACCGTGGACAGCGCGCACCTGTACAGTGCCACCGGCACCATCACCGCGCCCACCGGCGAGACCTGGACCATCCCAGTGTACTCGGCGCAGACGCGCAGCGACCTGCCGCAGCAGAACATCACCCACATCGCCATCCCGCAGGAGGCCTACGGTGCCGTGCATGTGGCCAGCGCCCCCGCCGGTCTCAAGCTGGAGGACGACAAGGACAAGATGGGGGGCAAGGGCGTGGtcacctcctcctccgcctccgtGGTGGCCACCTCCGCCGGCGGCACCCCGGTCTCGGCCGCCACCCACGAGGAGGTAGTGCAGACGCTCGCCAACACGCTGTTCCCGGCACAGTTCATGAACGGCAACATCCACATTCCCGTGGCCGTGCAGGCCGTGACCGGGGCCTACCCCGGCGCCACGCAGTCTacagTGCAGGTGACCGAGGTGGACACCCAGCCCCAGGCCCCCCCCGACCTGCTGCTGCCCAGCTCTCTGAAGCCGGAGGAGGGTCTGGAGGTGTGGCGCGGCTGGGCTCAGGGCAAGAACGCCGCGCTGGAGAAGGACACGCACACCAAGCTGGCCCCCATTGGCCGCCGGCAGCCCCTGCGGTTCCAGGAGGACCTGGTGTCGTGTGCTGTGGCAGAGCTGAACTTCGGCCTGTGTCTGATGACACGGGAGGCACGCTCTCTTGAGGGGGAGCCCTTCGAGGCCGATGTGCTCTACTACATCTTCCTCTGCATACAGAAGtACCTGTTTGAGAACAGCCGCGTGGACGACATCTTCTCGGACCCCTACTACAGCCGCTTCTCTCATCACGTGACAGAGGAGATGCTGTGGGAGTGTAAGCAGCTGGGCGCCCACTCCCCCGCCACCCTCCTCACCACACTCATGTTCTTCAACACAAAGTACTTCTTGCTGAAGACGGTGGAGCAGCACAGCAAGGTGGCGTTCTCTAAGGCGGAGAACCCAGAGAACCCCCTGCGCTGCCCCATCAAACTCTACGACTTCTACCTCTTCAAATGccCACAGAGTGTGAAGGGCCGCAACGACACCTTCTACCTGACCCCGGAACCCGTGGTGGCCCCCAACAGCCCCATCTGGTACTCCACCCAGCCAATCACACGCGAGCAGCTGGAGCACATGCTCACTCGCATCCTCATGGTCCGGGAGATCCAGGAGGCCCTTGCCATGGCATCGGGAAGCCTGCACTAGGACCAGGGGGAAGAGGAgtgaggagagggggaggaggaggaggtgacgAGGGGCTGCTGTTGAGGGACAATCTGACTTGGACAACTTGCTCTTCCTCACCCCTccccttcactctctctctgtcgatTCATCATCTGCCATCCTGCCCCGTCTCCTCGCCACCCCGtctctctcccatctctctccctcccgcTCTCTCCCTTTGATTGACCGAGAGAGAAACAcggtttccccccccccccacgcctCTTCTCCTGACTCCTCGCCAAATCAGCAGGGGTGTCCAGTGTGAGACACACTATGCAGTGGACAGACGGACGGGATGCTCGGACAGACGGACACAGTGGAGCAattaaggaggaaaaaaagttgCCCATctctacaatttttttttttttcggtttatttttctaagttgcatcttactttattttttaaataaatcagtgtactattttttttttttttggtttggtttgttgttGCAGCAGCGGGCGGCCCGTCTCCGTTTTGTTTCGAAGGCGGCCGATTCATCCTGTTTCATAAGGACAAACTCAAAACTTTACAGAGAAGAACGCCGTCCCCCCGCCATCCACCCCCTCGTCTGTTCCtctctttttccattttatgtcaggtttttcatctctctctctctatagcGACCGAAATGAGTTTCTCTCGTGGGGGCCGAGACACTGAGGAGCCTGGGATCTCTCGTTCCTTCTCTGTTTCATCTGTCGCTCTCATGCGGTTCAGTTCGCTCCCTGTCTCTTTCCCTcttttctcttcctgtctctcgcTGTATCTCTTTCTTCCTTCTGCTCTTTCCTCTGAAGTGTCTGTTCTCGGgcgggggtgtgtgtgggggggtgccaGCGAGCCTGTACGGACTGCAGCGGCACGTGAGGAGCGGCCCTCCCCGAGGCCGCCGGGCCACGGACACGCGCCGGTGCCAGTGTGGGGGGAGCGCAGGACTCTCATGTCTGGGAGATGGAGGTGCTGCTTGTAAAAGGAAGCAAACTAAAATCGTGGCACGGACGTGACTGGGGTGGAGCCCATCGGGACACCTTCAGAGCAGAGTGGAGGAGCAGCGTTTACCTTGCAAAGGATTTCTTTACAAGaagcaggggggtgggggtggtgttGGCGTCTCGGTCTCCCCCGGGTCTCGCCACAGCCAGAGCTCCAGGGGGGGAACCTTCCGGCGCACACAGGACTGACTGCGGACGGTTTTTATAAGGCTGTGTCCTGGAAGGGATGAAGAATATTAAaaggagaataaaaaataaatctaaagaCTTTATtatccccccccaccttccGTGTACCCTTggccctcccctccccccaggcACAGGGGTCTTGCCCCCAGCGCTCTCTGGGGCCTTTGGGCTCTGAACTGCATTGTAATATAAACACACTTGTATGATATacgataaaaaaacaacaaatagagACCACTctgctctttttttatttttatttttttcttttgtatttttattttctcactgtctctctccagcCCCCCCGCGCGCTCATATGTATTCGTTTTCTCCAGTTGTTTATTCAGAATGGCAAAGCACGTGTTTTCAAACATGCCTTTTGTACAGTGA

Function

GO: NA

KEGG:

id description
K24297 QRICH1; glutamine-rich protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25015 lncRNA downstream 22973 54615246 ~ 54615450 (-) True G20137
TU25009 lncRNA downstream 30809 54607363 ~ 54607614 (-) True G20131
TU25000 lncRNA downstream 58705 54579265 ~ 54579718 (-) True G20122
TU24982 lncRNA downstream 109226 54527784 ~ 54529197 (-) False AMCG00017358
TU24996 lncRNA downstream 127935 54510236 ~ 54510488 (-) True G20118
AMCG00017368 mRNA downstream 43066 54589059 ~ 54595357 (-) True AMCG00017368
AMCG00017365 mRNA downstream 50898 54580070 ~ 54587525 (-) True AMCG00017365
AMCG00017359 mRNA downstream 60330 54572425 ~ 54578093 (-) True AMCG00017359
AMCG00017362 mRNA downstream 67865 54570271 ~ 54570558 (-) True AMCG00017362
AMCG00017360 mRNA downstream 79828 54555357 ~ 54558595 (-) True AMCG00017360
AMCG00017367 mRNA upstream 6901 54654835 ~ 54661911 (-) True AMCG00017367
AMCG00017379 mRNA upstream 45950 54693884 ~ 54701627 (-) True AMCG00017379
AMCG00017380 mRNA upstream 56013 54703947 ~ 54704219 (-) True AMCG00017380
AMCG00017375 mRNA upstream 77671 54725605 ~ 54729120 (-) True AMCG00017375
AMCG00017374 mRNA upstream 85140 54733074 ~ 54748372 (-) True AMCG00017374
TU24923 other downstream 270407 54366784 ~ 54368016 (-) True G20064
TU24816 other downstream 484329 54117264 ~ 54154094 (-) True G19998
TU24820 other downstream 493207 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 604262 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 681083 53953294 ~ 53957340 (-) False AMCG00017334
TU25083 other upstream 52636 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 52636 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 52636 54700570 ~ 54723791 (-) False G20193
TU25136 other upstream 189163 54837097 ~ 54838491 (-) True G20237

Expression Profile