RNA id: AMCG00017368


Basic Information

Item Value
RNA id AMCG00017368
length 1098
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00017368
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54589059 ~ 54595357 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAAGAGTACGAGGTCATCGTGCTGGGGACAGGACTcaagGAGTGTGTTCTGTCGGGTATCATGTCAGTCAATGGGAGGAAGGTTCTGCACATCGACAGGAACCCTTACTACGGAGGAGAGAGTGCCTCCATCTCTCCCTTGGAGCAGTCTCTGGGTCGGGGGAGGGAGTGGAATGTTGACCTCATCCCCAAATTTCTCATGGCCAATGgccAGCTGGTGAAGATGCTGCTGTACACACAGGTGACGCGGTACCTGGACTTCAAGGTGGTGCAGGGCAGCTTCGTCAGCCGGGCCGGCCGGGTCCACAAGGTGCCGGCTACTGAGGCCGAGGCTCTGGGGTCAGACCTGATGGGTATGTTTGACAAGCGCCGTTTCCGCAAGCTGCTTCAGTTCGTCCAGCAGTTTGAGGAGGGCGACCTGCGTACCCACCAGGACCTGACCCCCCACGCCTCTGCGCGGGACCTCTTTCGCAAGTTCGACCTGGGGCCCGACGTCATTGAGTTCACTGGCCACGCCCTCGCGCTGCACCACAACGATGAGTCATTTGTGCGCTGTAAGCAGCTGATCTGTGACCCCAGCTATGTCCCCAACAAAGTGAGGAAGGTGGGCCGGGTCATCAGGGTCATCTGCATCCTCAACCATCCAATCAGAAACACGCAAGACGCCAGCTCCTGCCAGATCATCATCCCCCAGGCCCAGCTGCACAGGAAGTCAGATATCTATGTGTGTATGGTGTCCTATGCCCACAATGTGGCAGCAGAGGGGAAGTACATTGCCATGGTGAGCACCACCGTGGAGACCAGCACCCCCGAGAAGGAGGTGCAGCCGGGGCTGGATCTGCTGGAGCCCATCCTGCAGAAGTTTGTCTCCATTACCAACCTGCTCATCCCGAAAGACGACGGGAGGCAGAGTCAGGTCTTCATCTCTCGCTCCTATGACGCCGCCACGCACTTCGAGGCAGAGTGTGATGACATCAAGGACATGTACCTGCGCATGACGGGGTCGGGTAGCAGAACCGATCCGAACCGCAGACTCTGGACGCGGGCCGGAGTGCGTACGACCAGGCGGTCAGAAACGGCCCCCCAGCGGTGA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25000 lncRNA downstream 9341 54579265 ~ 54579718 (-) True G20122
TU24982 lncRNA downstream 59862 54527784 ~ 54529197 (-) False AMCG00017358
TU24996 lncRNA downstream 78571 54510236 ~ 54510488 (-) True G20118
TU24994 lncRNA downstream 91021 54494935 ~ 54498038 (-) True G20116
TU24938 lncRNA downstream 134783 54452621 ~ 54454276 (-) True G20078
TU25009 lncRNA upstream 12006 54607363 ~ 54607614 (-) True G20131
TU25015 lncRNA upstream 19889 54615246 ~ 54615450 (-) True G20137
AMCG00017365 mRNA downstream 1534 54580070 ~ 54587525 (-) True AMCG00017365
AMCG00017359 mRNA downstream 10966 54572425 ~ 54578093 (-) True AMCG00017359
AMCG00017362 mRNA downstream 18501 54570271 ~ 54570558 (-) True AMCG00017362
AMCG00017360 mRNA downstream 30464 54555357 ~ 54558595 (-) True AMCG00017360
AMCG00017358 mRNA downstream 53516 54529023 ~ 54535543 (-) True AMCG00017358
AMCG00017366 mRNA upstream 43066 54638423 ~ 54647934 (-) True AMCG00017366
AMCG00017367 mRNA upstream 59478 54654835 ~ 54661911 (-) True AMCG00017367
AMCG00017379 mRNA upstream 98527 54693884 ~ 54701627 (-) True AMCG00017379
AMCG00017380 mRNA upstream 108590 54703947 ~ 54704219 (-) True AMCG00017380
AMCG00017375 mRNA upstream 130248 54725605 ~ 54729120 (-) True AMCG00017375
TU24923 other downstream 221043 54366784 ~ 54368016 (-) True G20064
TU24816 other downstream 434965 54117264 ~ 54154094 (-) True G19998
TU24820 other downstream 443843 54142138 ~ 54145216 (-) False AMCG00017343
TU24763 other downstream 554898 54032639 ~ 54034161 (-) True G19950
TU24740 other downstream 631719 53953294 ~ 53957340 (-) False AMCG00017334
TU25029 other upstream 50480 54645837 ~ 54651864 (-) False AMCG00017366
TU25083 other upstream 105213 54700570 ~ 54704280 (-) False G20193
TU25084 other upstream 105213 54700570 ~ 54723791 (-) True G20193
TU25086 other upstream 105213 54700570 ~ 54723791 (-) False G20193
TU25136 other upstream 241740 54837097 ~ 54838491 (-) True G20237

Expression Profile