RNA id: TU12748


Basic Information

Item Value
RNA id TU12748
length 372
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G10233
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 322629 ~ 323000 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacaaatcacctgggccagatgggatatttccaacagtacttaaagaaatgagggaaattatttataggccgctaactcgaTTATTctaaatgacacttagaacaggggatgtgccaactgactggaagacagcaaatgtcataccaatacacaagaaaggggacaaagcTGAGCCAGggaattacagaccaatcagtctcacctgcatcacctgtaaaatgttggaaaaaatgattagacagaaaatagaggagcatctcaatgaaaaccatattcttggagatagtcaacatgggtttagacgaggcagatcatgtcttactaactTACTAaatttttttgaacatgcaactgcagctgtagatcacgtg

Function

GO:

id name namespace
GO:0048570 notochord morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12743 lncRNA downstream 51106 270921 ~ 271523 (-) True G10229
TU12722 lncRNA downstream 121513 200279 ~ 201116 (-) True G10214
TU12826 lncRNA upstream 1210401 1533401 ~ 1533655 (-) True G10298
TU12836 lncRNA upstream 1373805 1696805 ~ 1705596 (-) True G10307
TU12843 lncRNA upstream 1520928 1843928 ~ 1844160 (-) True G10314
TU12848 lncRNA upstream 1584925 1907925 ~ 1908294 (-) True G10319
TU12850 lncRNA upstream 1595429 1918429 ~ 1919336 (-) True G10321
AMCG00016010 mRNA downstream 125731 187079 ~ 196898 (-) True AMCG00016010
AMCG00016012 mRNA downstream 141092 159706 ~ 181537 (-) True AMCG00016012
AMCG00016013 mRNA downstream 168656 149601 ~ 153973 (-) True AMCG00016013
AMCG00016011 mRNA downstream 209064 90982 ~ 113565 (-) True AMCG00016011
AMCG00016018 mRNA upstream 940535 1263535 ~ 1312085 (-) True AMCG00016018
AMCG00016020 mRNA upstream 990779 1313779 ~ 1341211 (-) True AMCG00016020
AMCG00016019 mRNA upstream 1136072 1459072 ~ 1459832 (-) True AMCG00016019
AMCG00016023 mRNA upstream 2140071 2463071 ~ 2515080 (-) True AMCG00016023
AMCG00016022 mRNA upstream 2196543 2519543 ~ 2527277 (-) True AMCG00016022
TU12954 other upstream 2387399 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 2711422 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 3206252 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 3584759 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 7868546 8191546 ~ 8194432 (-) False G11326

Expression Profile