RNA id: TU12826



Basic Information


Item Value
RNA id TU12826
length 255
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G10298
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 1533401 ~ 1533655 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gcatttcaaaaaagttatgcattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcaaggccaacgtttggcaactcgaaccttcagctccctccacagatttt

Function


GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU12748 lncRNA downstream 1210401 322629 ~ 323000 (-) True G10233
TU12743 lncRNA downstream 1261878 270921 ~ 271523 (-) True G10229
TU12722 lncRNA downstream 1332285 200279 ~ 201116 (-) True G10214
TU12836 lncRNA upstream 163150 1696805 ~ 1705596 (-) True G10307
TU12843 lncRNA upstream 310273 1843928 ~ 1844160 (-) True G10314
TU12848 lncRNA upstream 374270 1907925 ~ 1908294 (-) True G10319
TU12850 lncRNA upstream 384774 1918429 ~ 1919336 (-) True G10321
TU12853 lncRNA upstream 553616 2087271 ~ 2087550 (-) True G10324
AMCG00016019 mRNA downstream 73569 1459072 ~ 1459832 (-) True AMCG00016019
AMCG00016020 mRNA downstream 192190 1313779 ~ 1341211 (-) True AMCG00016020
AMCG00016018 mRNA downstream 221316 1263535 ~ 1312085 (-) True AMCG00016018
AMCG00016010 mRNA downstream 1336503 187079 ~ 196898 (-) True AMCG00016010
AMCG00016012 mRNA downstream 1351864 159706 ~ 181537 (-) True AMCG00016012
AMCG00016023 mRNA upstream 929416 2463071 ~ 2515080 (-) True AMCG00016023
AMCG00016022 mRNA upstream 985888 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016024 mRNA upstream 998962 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016026 mRNA upstream 1062359 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016027 mRNA upstream 1073053 2606708 ~ 2671709 (-) True AMCG00016027
TU12954 other upstream 1176744 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 1500767 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 1995597 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 2374104 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 6657891 8191546 ~ 8194432 (-) False G11326

Expression Profile